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Structural snapshots and functional analysis of human angiogenin variants associated with Amyotrophic Lateral Sclerosis (ALS)
Biology and Chemistry Report
4AOH
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text HYDROLASE, ANGIOGENESIS, NEOVASCULARISATION, AMYOTROPIC LATERAL SCLEROSIS, ALS, MOTOR NEURON DISEASE, RIBONUCLEASE INHIBITOR, NUCLEAR LOCALISATION, NUCLEAR LOCALIZATION

    Polymeric Molecules

    Chain A
    Description ANGIOGENIN 
    Fragment RESIDUES 24-147 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14240.2 
    Source Method genetically manipulated  
    Entity Name RIBONUCLEASE 5, RNASE 5 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    TAR  D(-)-TARTARIC ACID  C4 H6 O6   150.09  View 
    TLA  L(+)-TARTARIC ACID  C4 H6 O6   150.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A ANGI_HUMAN P03950     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.1.27      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant Codon Plus Ripl
    Host Strain Bl21(de3)
    Host Vector Pet22b Plus
    Host Vector Type Plasmid


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    14 14q11.1-q11.2 283     angiogenin, ribonuclease, RNase A family, 5 ANG    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs121909535 LS-SNP   dbSNP   A 12 Q - > L Helix 21% (Intermediate) 14 21161830
    rs121909537 LS-SNP   dbSNP   A 17 K - > E Bend 89% (Exposed) 14 21161844
    rs121909536 LS-SNP   dbSNP   A 17 K - > I Bend 89% (Exposed) 14 21161845
    rs121909542 LS-SNP   dbSNP   A 28 S - > N Helix 35% (Intermediate) 14 21161878
    rs121909538 LS-SNP   dbSNP   A 31 R - > K Helix 53% (Exposed) 14 21161887
    rs11541242 LS-SNP   dbSNP   A 35 L - > P Coil 7% (Buried) 14 21161899
    rs148905586 LS-SNP   dbSNP   A 38 P - > R Turn 52% (Exposed) 14 21161908
    rs121909539 LS-SNP   dbSNP   A 39 C - > W Beta 7% (Buried) 14 21161912
    rs121909540 LS-SNP   dbSNP   A 40 K - > I Coil 27% (Intermediate) 14 21161914
    rs121909541 LS-SNP   dbSNP   A 46 I - > V Beta Ladder 0% (Buried) 14 21161931
    rs146485834 LS-SNP   dbSNP   A 51 R - > H Helix 73% (Exposed) 14 21161947
    rs141055235 LS-SNP   dbSNP   A 54 K - > E Helix 41% (Exposed) 14 21161955
    rs17560 LS-SNP   dbSNP   A 60 K - > E Turn 76% (Exposed) 14 21161973
    rs201135457 LS-SNP   dbSNP   A 95 R - > G Beta Ladder 55% (Exposed) 14 21162078
    rs141398857 LS-SNP   dbSNP   A 95 R - > L Beta Ladder 55% (Exposed) 14 21162079
    rs121909543 LS-SNP   dbSNP   A 112 P - > L Beta Ladder 0% (Buried) 14 21162130
    rs121909544 LS-SNP   dbSNP   A 113 V - > I Beta Ladder 24% (Intermediate) 14 21162132