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Crystallographic structure of 3mJL2 from the germinal line lambda 3
Biology and Chemistry Report
4AIZ
  •   Structure Details   Hide

    Structure Keywords

    Keywords IMMUNE SYSTEM
    Text IMMUNE SYSTEM, AMYLOIDOSIS

    Polymeric Molecules

    Chain A,C,D
    Description V2-17 PROTEIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11517.8 
    Source Method genetically manipulated  
    Entity Name 3MJL2 
    Chain B
    Description V2-17 PROTEIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11515.8 
    Source Method genetically manipulated  
    Entity Name 3MJL2 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    88Q  1,5:6,10-dianhydro-3,4,7,8-tetradeoxy-2,9-bis-C-(hydroxymethyl)-L-manno-decitol  C12 H22 O6   262.30  View 
    CIT  CITRIC ACID  C6 H8 O7   192.12  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,C,D Q5NV90_HUMAN Q5NV90     
    B Q5NV90_HUMAN Q5NV90     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,C,D
    GO ID   Ontology GO Term Definition
    6956   Complement Activation  Any Process Involved in the Activation of Any of the Steps of the Complement Cascade Which Allows For the Direct Killing of Microbes the Disposal of Immune Complexes and the Regulation of Other Immune Processes; the Initial Steps of Complement Activation Involve One of Three Pathways the Classical Pathway the Alternative Pathway and the Lectin Pathway All of Which Lead to the Terminal Complement Pathway. 
    6958   Complement Activation Classical Pathway  Any Process Involved in the Activation of Any of the Steps of the Classical Pathway of the Complement Cascade Which Allows For the Direct Killing of Microbes the Disposal of Immune Complexes and the Regulation of Other Immune Processes. 
    38095   Fc Epsilon Receptor Signaling Pathway  A Series of Molecular Signals Initiated by the Binding of the Fc Portion of Immunoglobulin E (ige) to an Fc Epsilon Receptor On the Surface of a Signal Receiving Cell and Ending with Regulation of a Downstream Cellular Process E.g. Transcription. the Fc Portion of an Immunoglobulin Is Its C Terminal Constant Region. 
    38096   Fc Gamma Receptor Signaling Pathway Involved in Phagocytosis  An Fc Gamma Receptor Signaling Pathway That Contributes to the Endocytic Engulfment of External Particulate Material by Phagocytes. 
    45087   Innate Immune Response  Innate Immune Responses Are Defense Responses Mediated by Germline Encoded Components That Directly Recognize Components of Potential Pathogens. 
    50776   Regulation of Immune Response  Any Process That Modulates the Frequency Rate or Extent of the Immune Response the Immunological Reaction of an Organism to an Immunogenic Stimulus. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 
    Chain B
    GO ID   Ontology GO Term Definition
    6956   Complement Activation  Any Process Involved in the Activation of Any of the Steps of the Complement Cascade Which Allows For the Direct Killing of Microbes the Disposal of Immune Complexes and the Regulation of Other Immune Processes; the Initial Steps of Complement Activation Involve One of Three Pathways the Classical Pathway the Alternative Pathway and the Lectin Pathway All of Which Lead to the Terminal Complement Pathway. 
    6958   Complement Activation Classical Pathway  Any Process Involved in the Activation of Any of the Steps of the Classical Pathway of the Complement Cascade Which Allows For the Direct Killing of Microbes the Disposal of Immune Complexes and the Regulation of Other Immune Processes. 
    38095   Fc Epsilon Receptor Signaling Pathway  A Series of Molecular Signals Initiated by the Binding of the Fc Portion of Immunoglobulin E (ige) to an Fc Epsilon Receptor On the Surface of a Signal Receiving Cell and Ending with Regulation of a Downstream Cellular Process E.g. Transcription. the Fc Portion of an Immunoglobulin Is Its C Terminal Constant Region. 
    38096   Fc Gamma Receptor Signaling Pathway Involved in Phagocytosis  An Fc Gamma Receptor Signaling Pathway That Contributes to the Endocytic Engulfment of External Particulate Material by Phagocytes. 
    45087   Innate Immune Response  Innate Immune Responses Are Defense Responses Mediated by Germline Encoded Components That Directly Recognize Components of Potential Pathogens. 
    50776   Regulation of Immune Response  Any Process That Modulates the Frequency Rate or Extent of the Immune Response the Immunological Reaction of an Organism to an Immunogenic Stimulus. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Pet22b
    Host Vector Type Plasmid


    Chain A,C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Pet22b
    Host Vector Type Plasmid