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An Information Portal to 110790 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE HUMAN CDKL2 KINASE DOMAIN
Biology and Chemistry Report
4AAA
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text TRANSFERASE, PHOSPHO-MIMETIC

    Polymeric Molecules

    Chain A
    Description CYCLIN-DEPENDENT KINASE-LIKE 2 
    Fragment KINASE DOMAIN, RESIDUES 1-308 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 38390.8 
    Source Method genetically manipulated  
    Entity Name PROTEIN KINASE P56 KKIAMRE, SERINE/THREONINE-PROTEIN KINASE KKIAMRE 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    DKI  5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE  C15 H13 F2 N7 O2 S2   425.44  View 
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CDKL2_HUMAN Q92772     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.11.22      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Baculovirus
    Host Plasmid Name PFB-LIC-BSE


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    4 4q21.1 8999     cyclin-dependent kinase-like 2 (CDC2-related kinase) CDKL2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs201841057 LS-SNP   dbSNP   A 39 D - > G Bend 20% (Intermediate) 4 76551057
    rs142690434 LS-SNP   dbSNP   A 43 M - > I Helix 69% (Exposed) 4 76551044
    rs148623133 LS-SNP   dbSNP   A 47 I - > V Helix 38% (Exposed) 4 76551034
    rs186779234 LS-SNP   dbSNP   A 65 N - > S Coil 39% (Exposed) 4 76539608
    rs35921414 LS-SNP   dbSNP   A 77 Y - > S Beta Ladder 12% (Intermediate) 4 76539572
    rs143948380 LS-SNP   dbSNP   A 128 K - > Q Coil 15% (Intermediate) 4 76532527
    rs17000707 LS-SNP   dbSNP   A 132 I - > T Beta Ladder 0% (Buried) 4 76532514
    rs146247136 LS-SNP   dbSNP   A 139 V - > A Coil 12% (Intermediate) 4 76532493
    rs201622412 LS-SNP   dbSNP   A 172 L - > I Helix 24% (Intermediate) 4 76532395
    rs138746387 LS-SNP   dbSNP   A 188 I - > T Helix 1% (Buried) 4 76530798
    rs186119175 LS-SNP   dbSNP   A 189 G - > C Helix 0% (Buried) 4 76530796
    rs56343717 LS-SNP   dbSNP   A 197 M - > T Helix 32% (Intermediate) 4 76530771
    rs188704685 LS-SNP   dbSNP   A 234 V - > A 3/10 Helix 70% (Exposed) 4 76529095
    rs200910442 LS-SNP   dbSNP   A 252 R - > C Helix 26% (Intermediate) 4 76529042
    rs139728274 LS-SNP   dbSNP   A 253 Y - > C Bend 5% (Buried) 4 76529038
    rs146212582 LS-SNP   dbSNP   A 259 V - > M Helix 21% (Intermediate) 4 76529021
    rs79924181 LS-SNP   dbSNP   A 261 I - > M Helix 2% (Buried) 4 76529013
    rs148087756 LS-SNP   dbSNP   A 270 I - > T Bend 14% (Intermediate) 4 76525540
    rs79921527 LS-SNP   dbSNP   A 273 D - > N 3/10 Helix 90% (Exposed) 4 76525532
    rs144803383 LS-SNP   dbSNP   A 279 A - > S 3/10 Helix 58% (Exposed) 4 76525514
    rs142575330 LS-SNP   dbSNP   A 294 E - > D Helix 64% (Exposed) 4 76525467