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An Information Portal to 109093 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE HUMAN CDKL2 KINASE DOMAIN
Biology and Chemistry Report
4AAA
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text TRANSFERASE, PHOSPHO-MIMETIC

    Polymeric Molecules

    Chain A
    Description CYCLIN-DEPENDENT KINASE-LIKE 2 
    Fragment KINASE DOMAIN, RESIDUES 1-308 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 38390.8 
    Source Method genetically manipulated  
    Entity Name PROTEIN KINASE P56 KKIAMRE, SERINE/THREONINE-PROTEIN KINASE KKIAMRE 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    DKI  5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE  C15 H13 F2 N7 O2 S2   425.44  View 
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CDKL2_HUMAN Q92772     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.11.22      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    9966   Regulation of Signal Transduction  Any Process That Modulates the Frequency Rate or Extent of Signal Transduction. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Baculovirus
    Host Plasmid Name PFB-LIC-BSE


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    4 4q21.1 8999     cyclin-dependent kinase-like 2 (CDC2-related kinase) CDKL2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs201841057 LS-SNP   dbSNP   A 39 D - > G Bend 20% (Intermediate) 4 76551057
    rs142690434 LS-SNP   dbSNP   A 43 M - > I Helix 69% (Exposed) 4 76551044
    rs148623133 LS-SNP   dbSNP   A 47 I - > V Helix 38% (Exposed) 4 76551034
    rs186779234 LS-SNP   dbSNP   A 65 N - > S Coil 39% (Exposed) 4 76539608
    rs35921414 LS-SNP   dbSNP   A 77 Y - > S Beta Ladder 12% (Intermediate) 4 76539572
    rs143948380 LS-SNP   dbSNP   A 128 K - > Q Coil 15% (Intermediate) 4 76532527
    rs17000707 LS-SNP   dbSNP   A 132 I - > T Beta Ladder 0% (Buried) 4 76532514
    rs146247136 LS-SNP   dbSNP   A 139 V - > A Coil 12% (Intermediate) 4 76532493
    rs201622412 LS-SNP   dbSNP   A 172 L - > I Helix 24% (Intermediate) 4 76532395
    rs138746387 LS-SNP   dbSNP   A 188 I - > T Helix 1% (Buried) 4 76530798
    rs186119175 LS-SNP   dbSNP   A 189 G - > C Helix 0% (Buried) 4 76530796
    rs56343717 LS-SNP   dbSNP   A 197 M - > T Helix 32% (Intermediate) 4 76530771
    rs188704685 LS-SNP   dbSNP   A 234 V - > A 3/10 Helix 70% (Exposed) 4 76529095
    rs200910442 LS-SNP   dbSNP   A 252 R - > C Helix 26% (Intermediate) 4 76529042
    rs139728274 LS-SNP   dbSNP   A 253 Y - > C Bend 5% (Buried) 4 76529038
    rs146212582 LS-SNP   dbSNP   A 259 V - > M Helix 21% (Intermediate) 4 76529021
    rs79924181 LS-SNP   dbSNP   A 261 I - > M Helix 2% (Buried) 4 76529013
    rs148087756 LS-SNP   dbSNP   A 270 I - > T Bend 14% (Intermediate) 4 76525540
    rs79921527 LS-SNP   dbSNP   A 273 D - > N 3/10 Helix 90% (Exposed) 4 76525532
    rs144803383 LS-SNP   dbSNP   A 279 A - > S 3/10 Helix 58% (Exposed) 4 76525514
    rs142575330 LS-SNP   dbSNP   A 294 E - > D Helix 64% (Exposed) 4 76525467