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Crystal structure of PIM1 kinase with ETP46546
Biology and Chemistry Report
4A7C
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text TRANSFERASE, PROTEIN KINASE, INHIBITOR

    Polymeric Molecules

    Chain A
    Description PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE PIM-1 
    Fragment CATALYTIC DOMAIN, RESIDUES 434-717 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 35445.4 
    Source Method genetically manipulated  
    Entity Name PIM1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ACT  ACETATE ION  C2 H3 O2   59.04  View 
    E46  N-(piperidin-4-ylmethyl)-3-[3-(trifluoromethyloxy)phenyl]-[1,2,3]triazolo[4,5-b]pyridin-5-amine  C18 H19 F3 N6 O   392.38  View 
    IMD  IMIDAZOLE  C3 H5 N2   69.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PIM1_HUMAN P11309     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.11.1      

    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant Rosetta Plyss
    Host Strain Bl21(de3)


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6p21.2 5292     Pim-1 proto-oncogene, serine/threonine kinase PIM1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs149210226 LS-SNP   dbSNP   A 82 N - > D Bend 59% (Exposed) 6 37138904
    rs35760989 LS-SNP   dbSNP   A 124 E - > Q Bend 63% (Exposed) 6 37139030
    rs200523275 LS-SNP   dbSNP   A 135 E - > K Helix 75% (Exposed) 6 37139063
    rs33989191 LS-SNP   dbSNP   A 142 E - > D Helix 35% (Intermediate) 6 37139086
    rs200536541 LS-SNP   dbSNP   A 157 H - > P Helix 24% (Intermediate) 6 37139130
    rs141143854 LS-SNP   dbSNP   A 157 H - > Y Helix 24% (Intermediate) 6 37139129
    rs200495767 LS-SNP   dbSNP   A 184 L - > V Beta Ladder 2% (Buried) 6 37139210
    rs137884665 LS-SNP   dbSNP   A 197 V - > F Coil 23% (Intermediate) 6 37139249
    rs199791472 LS-SNP   dbSNP   A 206 V - > E 3/10 Helix 22% (Intermediate) 6 37140781
    rs141695323 LS-SNP   dbSNP   A 282 E - > V Helix 70% (Exposed) 6 37141770
    rs9349029 LS-SNP   dbSNP   A 300 A - > V Helix 0% (Buried) 6 37141824
    rs199624946 LS-SNP   dbSNP   A 302 I - > T Helix 58% (Exposed) 6 37141830