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Structures of MITD1
Biology and Chemistry Report
4A5X
  •   Structure Details   Hide

    Structure Keywords

    Keywords PROTEIN TRANSPORT
    Text PROTEIN TRANSPORT, ESCRT, CYTOKINESIS, MIDBODY

    Polymeric Molecules

    Chain A,B
    Description MIT DOMAIN-CONTAINING PROTEIN 1 
    Fragment MIT, RESIDUES 9-85 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10053.5 
    Source Method genetically manipulated  
    Entity Name MITD1 
    Chain C,D
    Description CHARGED MULTIVESICULAR BODY PROTEIN 1A 
    Fragment RESIDUES 184-196 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1901.2 
    Source Method genetically manipulated  
    Entity Name CHROMATIN-MODIFYING PROTEIN 1A, CHMP1A, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 46-1, VPS46-1, HVPS46-1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    P15  2,5,8,11,14,17-HEXAOXANONADECAN-19-OL  C13 H28 O7   296.36  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B MITD1_HUMAN Q69YV0     
    C,D CHM1A_HUMAN A2RU09     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant C41
    Host Strain Bl21
    Host Vector Popth
    Host Vector Type Plasmid


    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant C41
    Host Strain Bl21
    Host Vector Popth
    Host Vector Type Plasmid


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2q11.2 129531     MIT, microtubule interacting and transport, domain containing 1 MITD1    
    16 16q24.3 5119     charged multivesicular body protein 1A CHMP1A    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs180906983 LS-SNP   dbSNP   A 10 P - > L Coil 90% (Exposed) 2 99797416
    rs146264326 LS-SNP   dbSNP   A 14 A - > G Helix 5% (Buried) 2 99797404
    rs201079117 LS-SNP   dbSNP   A 21 R - > Q Helix 19% (Intermediate) 2 99797383
    rs200819459 LS-SNP   dbSNP   A 73 E - > G Helix 28% (Intermediate) 2 99790413
    rs11539111 LS-SNP   dbSNP   A 75 I - > M Helix 1% (Buried) 2 99790406
    rs147710932 LS-SNP   dbSNP   A 80 D - > E Helix 64% (Exposed) 2 99790391