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Identification of 2-(4-pyridyl)thienopyridinones as GSK-3beta inhibitors
Biology and Chemistry Report
3ZRL
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/PEPTIDE
    Text TRANSFERASE-PEPTIDE COMPLEX, KINASE

    Polymeric Molecules

    Chain A,B
    Description GLYCOGEN SYNTHASE KINASE-3 BETA 
    Fragment RESIDUES 23-393 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 42036.6 
    Source Method genetically manipulated  
    Entity Name GSK-3 BETA 
    Chain X,Y
    Description PROTO-ONCOGENE FRAT1 
    Fragment RESIDUES 197-226 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 3772.5 
    Source Method genetically manipulated  
    Entity Name FREQUENTLY REARRANGED IN ADVANCED T-CELL LYMPHOMAS 1, FRAT 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    SO4  SULFATE ION  O4 S   96.06  View 
    ZRL  7-BROMO-2-PYRIDIN-4-YL-5H-THIENO[3,2-C]PYRIDIN-4-ONE  C12 H7 Br N2 O S   307.17  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B GSK3B_HUMAN D3DN89     
    X,Y FRAT1_HUMAN Q5JTI1     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  2.7.11.1      
    A B  2.7.11.26      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain X,Y
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Baculovirus


    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Baculovirus


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3q13.3 2932     glycogen synthase kinase 3 beta GSK3B    
    10 10q24.1 10023     frequently rearranged in advanced T-cell lymphomas 1 FRAT1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs200600198 LS-SNP   dbSNP   A 47 G - > V Coil 29% (Intermediate) 3 119721035
    rs199688358 LS-SNP   dbSNP   A 48 P - > L Coil 74% (Exposed) 3 119721032
    rs201555172 LS-SNP   dbSNP   A 59 T - > A Beta Ladder 46% (Exposed) 3 119721000
    rs184532476 LS-SNP   dbSNP   A 70 V - > I Beta Ladder 19% (Intermediate) 3 119720967 ZRL
    rs202134968 LS-SNP   dbSNP   A 78 S - > L Turn 45% (Exposed) 3 119720942
    rs200380044 LS-SNP   dbSNP   A 143 A - > S Helix 22% (Intermediate) 3 119642270
    rs144831005 LS-SNP   dbSNP   A 150 K - > Q Turn 92% (Exposed) 3 119642249
    rs140893888 LS-SNP   dbSNP   A 150 K - > T Turn 92% (Exposed) 3 119642248
    rs72546695 LS-SNP   dbSNP   A 152 T - > M Coil 46% (Exposed) 3 119642242
    rs199990599 LS-SNP   dbSNP   A 162 M - > V Helix 1% (Buried) 3 119635015
    rs148468264 LS-SNP   dbSNP   A 166 F - > L Helix 0% (Buried) 3 119635001
    rs200780530 LS-SNP   dbSNP   A 170 A - > T Helix 8% (Buried) 3 119634991
    rs201450363 LS-SNP   dbSNP   A 182 I - > T Coil 0% (Buried) 3 119634954
    rs200768845 LS-SNP   dbSNP   A 195 V - > I Coil 23% (Intermediate) 3 119634916
    rs201448262 LS-SNP   dbSNP   A 235 T - > P Coil 49% (Exposed) 3 119631563
    rs200882593 LS-SNP   dbSNP   A 240 V - > I Helix 1% (Buried) 3 119624697
    rs200373768 LS-SNP   dbSNP   A 278 R - > G Helix 48% (Exposed) 3 119595337
    rs140668532 LS-SNP   dbSNP   A 304 V - > F Helix 18% (Intermediate) 3 119582452
    rs72548709 LS-SNP   dbSNP   A 319 R - > H Turn 17% (Intermediate) 3 119582406
    rs199730714 LS-SNP   dbSNP   A 319 R - > C Turn 17% (Intermediate) 3 119582407
    rs201790494 LS-SNP   dbSNP   A 356 T - > A Coil 21% (Intermediate) 3 119582296
    rs201871343 LS-SNP   dbSNP   A 359 L - > F Coil 1% (Buried) 3 119582287
    rs201010589 LS-SNP   dbSNP   A 381 H - > R Turn 50% (Exposed) 3 119562155
    rs149631706 LS-SNP   dbSNP   A 383 R - > Q Coil 49% (Exposed) 3 119562149