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Crystal structure of JmjC domain of human histone demethylase UTY
Biology and Chemistry Report
3ZLI
  •   Structure Details   Hide

    Structure Keywords

    Keywords OXIDOREDUCTASE
    Text OXIDOREDUCTASE

    Polymeric Molecules

    Chain A,B
    Description HISTONE DEMETHYLASE UTY 
    Fragment JMJC DOMAIN, RESIDUES 878-1347 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 55007.0 
    Source Method genetically manipulated  
    Entity Name UBIQUITOUSLY-TRANSCRIBED TPR PROTEIN ON THE Y CHROMOSOME, UBIQUITOUSLY-TRANSCRIBED Y CHROMOSOME TETRATRICOPEPTIDE REPEAT PROTEIN 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    AKG  2-OXOGLUTARIC ACID  C5 H6 O5   146.10  View 
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
    FE2  FE (II) ION  Fe   55.85  View 
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B UTY_HUMAN A8K9Z3     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  1.14.11      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Baculovirus
    Host Plasmid Name PFB-CT10HF-LIC


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    Y Yq11 7404     ubiquitously transcribed tetratricopeptide repeat containing, Y-linked UTY    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs200431840 LS-SNP   dbSNP   A 1065 L - > F Helix 1% (Buried) Y 15417360
    rs200677460 LS-SNP   dbSNP   A 1238 M - > I Helix 29% (Intermediate) Y 15409592