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X-ray structure of the birnavirus VP1-VP3 complex
Biology and Chemistry Report
3ZED
  •   Structure Details   Hide

    Structure Keywords

    Keywords VIRAL PROTEIN
    Text VIRAL PROTEIN, VIRUS MORPHOGENESIS

    Polymeric Molecules

    Chain A,B,C
    Description RNA-DIRECTED RNA POLYMERASE 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 95633.3 
    Source Method genetically manipulated  
    Entity Name RDRP, PROTEIN VP1, VP1 POLYMERASE 
    Chain D,E,F
    Description CAPSID PROTEIN VP3 
    Fragment VP3 C-TERMINAL PEPTIDE RESIDUES 735-972 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 27244.7 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    POTASSIUM ION  K   39.10  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C RDRP_IPNVJ P22173     
    D,E,F POLS_IPNVJ P05844     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C  2.7.7.48      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    18144   RNA Protein Covalent Cross Linking  The Formation of a Covalent Cross Link Between RNA and a Protein. 
    19012   Virion  The Complete Fully Infectious Extracellular Virus Particle. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5525   GTP Binding  Interacting Selectively and Non Covalently with GTP Guanosine Triphosphate. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    16779   Nucleotidyltransferase Activity  Catalysis of the Transfer of a Nucleotidyl Group to a Reactant. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain D,E,F
    Scientific Name Infectious pancreatic necrosis virus  
    Strain JASPER
    Host Scientific Name Escherichia coli b  
    Host Strain B834(de3)
    Host Vector Popinf
    Host Vector Type Plasmid


    Chain A,B,C
    Scientific Name Infectious pancreatic necrosis virus  
    Strain JASPER
    Host Scientific Name Escherichia coli b  
    Host Strain B834(de3)
    Host Vector Pet21a(plus)
    Host Vector Type Plasmid