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Crystal structure of mouse Endonuclease VIII-LIKE 3 (mNEIL3)
Biology and Chemistry Report
3W0F
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text HELIX TWO TURNS HELIX, ZINC FINGER, DNA binding, HYDROLASE

    Polymeric Molecules

    Chain A
    Description Endonuclease 8-like 3 
    Fragment glycosylase domain, UNP residues 2-282 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 31848.1 
    Source Method genetically manipulated  
    Entity Name DNA glycosylase FPG2, DNA glycosylase/AP lyase Neil3, Endonuclease VIII-like 3, Nei-like protein 3 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    IOD  IODIDE ION  I   126.90  View 
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A NEIL3_MOUSE Q4ADY6     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.2.2      
    4.2.99.18      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6281   DNA Repair  The Process of Restoring DNA After Damage. Genomes Are Subject to Damage by Chemical and Physical Agents in the Environment (e.g. Uv and Ionizing Radiations Chemical Mutagens Fungal and Bacterial Toxins Etc.) and by Free Radicals or Alkylating Agents Endogenously Generated in Metabolism. DNA Is Also Damaged Because of Errors During Its Replication. a Variety of Different DNA Repair Pathways Have Been Reported That Include Direct Reversal Base Excision Repair Nucleotide Excision Repair Photoreactivation Bypass Double Strand Break Repair Pathway and Mismatch Repair Pathway. 
    6284   Base Excision Repair  In Base Excision Repair an Altered Base Is Removed by a DNA Glycosylase Enzyme Followed by Excision of the Resulting Sugar Phosphate. the Small Gap Left in the DNA Helix Is Filled in by the Sequential Action of DNA Polymerase and DNA Ligase. 
    6289   Nucleotide Excision Repair  A DNA Repair Process in Which a Small Region of the Strand Surrounding the Damage Is Removed From the DNA Helix As an Oligonucleotide. the Small Gap Left in the DNA Helix Is Filled in by the Sequential Action of DNA Polymerase and DNA Ligase. Nucleotide Excision Repair Recognizes a Wide Range of Substrates Including Damage Caused by Uv Irradiation (pyrimidine Dimers and 6 4 Photoproducts) and Chemicals (intrastrand Cross Links and Bulky Adducts). 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3684   Damaged DNA Binding  Interacting Selectively and Non Covalently with Damaged Dna. 
    3906   DNA-(apurinic or apyrimidinic site) lyase activity  Catalysis of the Cleavage of the C O P Bond 3' to the Apurinic or Apyrimidinic Site in DNA by a Beta Elimination Reaction Leaving a 3' Terminal Unsaturated Sugar and a Product with a Terminal 5' Phosphate. 
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 
    16799   Hydrolase Activity Hydrolyzing N Glycosyl Compounds  Catalysis of the Hydrolysis of Any N Glycosyl Bond. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Mouse
    Scientific Name Mus musculus  
    Gene mouse, neil3
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 Star (de3)
    Host Vector Type Plasmid
    Host Plasmid Name pETDuet2-T7EcoMap-ORF6-MmuNeil3 324


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    8 8 B1.3|8 234258     nei like 3 (E. coli) NEIL3