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Crystal structure of methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence
Biology and Chemistry Report
3VXV
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE/DNA
    Text methyl CpG binding domain, protein-DNA complex, versatile base recognition, HYDROLASE-DNA complex

    Polymeric Molecules

    Chain A
    Description Methyl-CpG-binding domain protein 4 
    Fragment methyl CpG binding domain, UNP residues 69-136 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7829.2 
    Source Method genetically manipulated  
    Entity Name Methyl-CpG-binding protein MBD4, Mismatch-specific DNA N-glycosylase 
    Chain B
    Description DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 4263.8 
    Source Method synthetic  
    Chain C
    Description DNA (5'-D(*GP*TP*CP*TP*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 4326.9 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ACT  ACETATE ION  C2 H3 O2   59.04  View 
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A MBD4_MOUSE Q792D2     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.2.2      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Mouse
    Scientific Name Mus musculus  
    Gene mbd4
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6 E3|6 53.72 cM 17193     methyl-CpG binding domain protein 4 MBD4