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Crystal structure of histone methyltransferase SET7/9 in comlex with DAAM-3
Biology and Chemistry Report
3VV0
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text SET domain, transferase, adenosylmethionine binding, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A
    Description Histone-lysine N-methyltransferase SETD7 
    Fragment residues 111-366 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 29083.4 
    Source Method genetically manipulated  
    Entity Name Histone H3-K4 methyltransferase SETD7, H3-K4-HMTase SETD7, Lysine N-methyltransferase 7, SET domain-containing protein 7, SET7/9 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    KH3  5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine  C22 H38 N8 O5   494.59  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A SETD7_HUMAN B5WWL3     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.1.1.43      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene setd7, kiaa1717, kmt7, set7, set9
    Host Scientific Name Cell-free synthesis  
    Host Vector Type Plasmid
    Host Plasmid Name PX100709-08


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    4 4q28 80854     SET domain containing (lysine methyltransferase) 7 SETD7    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs76651232 LS-SNP   dbSNP   A 154 A - > T Beta Ladder 0% (Buried) 4 140450287
    rs149456418 LS-SNP   dbSNP   A 160 I - > V Beta Ladder 51% (Exposed) 4 140450269
    rs150697186 LS-SNP   dbSNP   A 200 C - > G Coil 40% (Exposed) 4 140444554
    rs141988823 LS-SNP   dbSNP   A 214 E - > K Turn 61% (Exposed) 4 140444512
    rs200323700 LS-SNP   dbSNP   A 249 R - > Q Beta Ladder 13% (Intermediate) 4 140441447
    rs61734299 LS-SNP   dbSNP   A 266 T - > I Coil 18% (Intermediate) 4 140439162 NULL
    rs200291509 LS-SNP   dbSNP   A 288 C - > SY Coil 19% (Intermediate) 4 140439096
    rs139141710 LS-SNP   dbSNP   A 304 I - > M Beta Ladder 40% (Exposed) 4 140439047
    rs149141539 LS-SNP   dbSNP   A 309 V - > A Beta Ladder 39% (Exposed) 4 140432992