POP-OUT | CLOSE
 
Crystal structure of histone methyltransferase SET7/9 in comlex with AAM-1
Biology and Chemistry Report
3VUZ
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text SET domain, transferase, adenosylmethionine binding, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A
    Description Histone-lysine N-methyltransferase SETD7 
    Fragment UNP residues 111-366 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 29083.4 
    Source Method genetically manipulated  
    Entity Name Histone H3-K4 methyltransferase SETD7, H3-K4-HMTase SETD7, Lysine N-methyltransferase 7, SET domain-containing protein 7, SET7/9 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    K15  5'-{[(3S)-3-amino-3-carboxypropyl](hexyl)amino}-5'-deoxyadenosine  C20 H33 N7 O5   451.52  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A SETD7_HUMAN B5WWL3     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.1.1.43      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene setd7, kiaa1717, kmt7, set7, set9
    Host Scientific Name Cell-free synthesis  
    Host Vector Type Plasmid
    Host Plasmid Name PX100709-08


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    4 4q28 80854     SET domain containing (lysine methyltransferase) 7 SETD7    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs78984848 LS-SNP   dbSNP   A 13 E - > G Coil 0% (Buried) 4 140477254
    rs147068285 LS-SNP   dbSNP   A 30 Y - > D Coil 0% (Buried) 4 140468156
    rs141627277 LS-SNP   dbSNP   A 42 H - > Q Coil 0% (Buried) 4 140468118
    rs147886067 LS-SNP   dbSNP   A 48 R - > Q Coil 0% (Buried) 4 140468101
    rs201937432 LS-SNP   dbSNP   A 48 R - > W Coil 0% (Buried) 4 140468102
    rs139666025 LS-SNP   dbSNP   A 85 T - > M Coil 0% (Buried) 4 140454437
    rs146233760 LS-SNP   dbSNP   A 111 K - > T Coil 0% (Buried) 4 140454359
    rs143297123 LS-SNP   dbSNP   A 115 R - > C Coil 0% (Buried) 4 140454348
    rs76651232 LS-SNP   dbSNP   A 154 A - > T Beta Ladder 0% (Buried) 4 140450287
    rs149456418 LS-SNP   dbSNP   A 160 I - > V Beta Ladder 50% (Exposed) 4 140450269
    rs150697186 LS-SNP   dbSNP   A 200 C - > G Coil 42% (Exposed) 4 140444554
    rs141988823 LS-SNP   dbSNP   A 214 E - > K Helix 51% (Exposed) 4 140444512
    rs200323700 LS-SNP   dbSNP   A 249 R - > Q Beta Ladder 12% (Intermediate) 4 140441447
    rs61734299 LS-SNP   dbSNP   A 266 T - > I Coil 11% (Intermediate) 4 140439162 NULL
    rs200291509 LS-SNP   dbSNP   A 288 C - > SY Coil 20% (Intermediate) 4 140439096
    rs139141710 LS-SNP   dbSNP   A 304 I - > M Beta Ladder 38% (Exposed) 4 140439047
    rs149141539 LS-SNP   dbSNP   A 309 V - > A Beta Ladder 37% (Exposed) 4 140432992