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Crystal structures of rat VDR-LBD with R270L mutation
Biology and Chemistry Report
3VT5
  •   Structure Details   Hide

    Structure Keywords

    Keywords HORMONE RECEPTOR
    Text Transcription, HORMONE RECEPTOR

    Polymeric Molecules

    Chain A
    Description Vitamin D3 receptor 
    Fragment UNP RESIDUES 116-423 
    Mutation R270L 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 30551.2 
    Source Method genetically manipulated  
    Entity Name VDR, 1,25-dihydroxyvitamin D3 receptor, Nuclear receptor subfamily 1 group I member 1 
    Chain C
    Description COACTIVATOR PEPTIDE DRIP 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1570.9 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    YI2  (1R,2E,3R,5Z,7E)-17-{(1S)-1-[(2-ethyl-2-hydroxybutyl)sulfanyl]ethyl}-2-(2-hydroxyethylidene)-9,10-secoestra-5,7,16-triene-1,3-diol  C28 H44 O4 S   476.71  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A VDR_RAT P13053     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    43401   Steroid Hormone Mediated Signaling Pathway  A Series of Molecular Signals Mediated by a Steroid Hormone Binding to a Receptor. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3700   Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 
    3707   Steroid Hormone Receptor Activity  Combining with a Steroid Hormone and Transmitting the Signal Within the Cell to Initiate a Change in Cell Activity or Function. 
    4887   Thyroid Hormone Receptor Activity  Combining with Thyroid Hormone and Transmitting the Signal to the Transcriptional Machinery by Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription by RNA Polymerase Ii. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Rats
    Scientific Name Rattus norvegicus  
    Gene nr1i1, vdr
    Host Scientific Name Escherichia coli  
    Host Strain C41
    Host Vector Type Plasmid
    Host Plasmid Name pET14b


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7q36 24873     vitamin D (1,25- dihydroxyvitamin D3) receptor VDR