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HIV-1 IN core domain in complex with 6-fluoro-4H-1,3-benzodioxine-8-carboxylic acid
Biology and Chemistry Report
3VQB
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text RNaseH, DNA binding, DNA cleavage, DNA integration, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A,B
    Description POL polyprotein 
    Fragment integrase core domain, UNP residues 770-927 
    Mutation C56S, W131D, F139D, F185H 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17248.7 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CD  CADMIUM ION  Cd   112.41  View 
    FBG  6-fluoro-4H-1,3-benzodioxine-8-carboxylic acid  C9 H7 F O4   198.15  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B Q72498_9HIV1 Q72498     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    15074   DNA Integration  The Process in Which a Segment of DNA Is Incorporated Into Another Usually Larger DNA Molecule Such As a Chromosome. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Human immunodeficiency virus 1  
    Strain NL43
    Gene pol
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name PeT23b+