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LysX from Thermus thermophilus complexed with AMP-PNP
Biology and Chemistry Report
3VPD
  •   Structure Details   Hide

    Structure Keywords

    Keywords LIGASE
    Text ATP-dependenet amine/thiol ligase family, ATP-dependenet amine/thiol ligase, LIGASE

    Polymeric Molecules

    Chain A,B
    Description Ribosomal protein S6 modification protein 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 30823.8 
    Source Method genetically manipulated  
    Entity Name TtLysX, RimK 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ANP  PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER  C10 H17 N6 O12 P3   506.20  View 
    BUA  BUTANOIC ACID  C4 H8 O2   88.11  View 
    CIT  CITRIC ACID  C6 H8 O7   192.12  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B LYSX_THET8 Q5SH23     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  6.3.2.n4      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    8652   Cellular Amino Acid Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Amino Acids Organic Acids Containing One or More Amino Substituents. 
    9085   Lysine Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Lysine 2 6 Diaminohexanoic Acid. 
    19878   Lysine Biosynthetic Process Via Aminoadipic Acid  The Chemical Reactions and Pathways Resulting in the Formation of Lysine by the Aminoadipic Pathway. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16874   Ligase Activity  Catalysis of the Joining of Two Substances or Two Groups Within a Single Molecule with the Concomitant Hydrolysis of the Diphosphate Bond in ATP or a Similar Triphosphate. 
    16881   Acid Amino Acid Ligase Activity  Catalysis of the Ligation of an Acid to an Amino Acid Via a Carbon Nitrogen Bond with the Concomitant Hydrolysis of the Diphosphate Bond in ATP or a Similar Triphosphate. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Thermus thermophilus  
    Gene lysx, rimk
    Host Scientific Name Escherichia coli  
    Host Strain Bl21codonplus(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET-TtLysX