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An Information Portal to 105339 Biological Macromolecular Structures

ArgX from Sulfolobus tokodaii complexed with LysW/Glu/ADP/Mg/Zn/Sulfate
Biology and Chemistry Report
3VPB
  •   Structure Details   Hide

    Structure Keywords

    Keywords LIGASE
    Text ATP-dependent amine/thiol ligase family, ATP-dependent amine/thiol ligase, LysW, Enzyme-Carrier protein complex, LIGASE

    Polymeric Molecules

    Chain A,B,C,D
    Description Putative acetylornithine deacetylase 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 31572.7 
    Source Method genetically manipulated  
    Chain E,F
    Description Alpha-aminoadipate carrier protein lysW 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6108.8 
    Source Method genetically manipulated  
    Entity Name AAA carrier protein lysW 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ADP  ADENOSINE-5'-DIPHOSPHATE  C10 H15 N5 O10 P2   427.20  View 
    GLU  GLUTAMIC ACID  C5 H9 N O4   147.13  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
    SO4  SULFATE ION  O4 S   96.06  View 
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D ARGX_SULTO Q970U6     
    E,F LYSW_SULTO Q976J8     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C D  6.3.2      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D
    GO ID   Ontology GO Term Definition
    6464   Cellular Protein Modification Process  The Covalent Alteration of One or More Amino Acids Occurring in Proteins Peptides and Nascent Polypeptides (co Translational Post Translational Modifications) Occurring At the Level of an Individual Cell. Includes the Modification of Charged Trnas That Are Destined to Occur in a Protein (pre Translation Modification). 
    6526   Arginine Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Arginine 2 Amino 5 (carbamimidamido)pentanoic Acid. 
    8652   Cellular Amino Acid Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Amino Acids Organic Acids Containing One or More Amino Substituents. 
    9085   Lysine Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Lysine 2 6 Diaminohexanoic Acid. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16874   Ligase Activity  Catalysis of the Joining of Two Substances or Two Groups Within a Single Molecule with the Concomitant Hydrolysis of the Diphosphate Bond in ATP or a Similar Triphosphate. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    Chain E,F
    GO ID   Ontology GO Term Definition
    6526   Arginine Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Arginine 2 Amino 5 (carbamimidamido)pentanoic Acid. 
    8652   Cellular Amino Acid Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Amino Acids Organic Acids Containing One or More Amino Substituents. 
    9085   Lysine Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Lysine 2 6 Diaminohexanoic Acid. 
    19878   Lysine Biosynthetic Process Via Aminoadipic Acid  The Chemical Reactions and Pathways Resulting in the Formation of Lysine by the Aminoadipic Pathway. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain E,F
    Scientific Name Sulfolobus tokodaii  
    Strain DSM 16993, JCM 10545, NBRC 100140, 7
    Gene lysw, stk_01925, sts023
    Host Scientific Name Escherichia coli  
    Host Strain Bl21codonplus(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET-26b(+), pET-StLysW


    Chain A,B,C,D
    Scientific Name Sulfolobus tokodaii  
    Strain DSM 16993, JCM 10545, NBRC 100140, 7
    Gene arge, stk_15050
    Host Scientific Name Escherichia coli  
    Host Strain Bl21codonplus(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET-26b(+), pET-StArgX


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 1458077     hypothetical protein STS023