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Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
Biology and Chemistry Report
3VHT
  •   Structure Details   Hide

    Structure Keywords

    Keywords FLUORESCENT PROTEIN/PROTEIN BINDING
    Text GREEN FLUORESCENT PROTEIN, FUSION PROTEIN, ZINC FINGER, UBIQUITIN-BINDING DOMAIN, FLUORESCENT PROTEIN-PROTEIN BINDING complex

    Polymeric Molecules

    Chain A
    Description Green fluorescent protein 
    Fragment GFP domain 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 26306.8 
    Source Method genetically manipulated  
    Chain B
    Description Green fluorescent protein, ATPase WRNIP1 
    Fragment GFP-Wrnip1 UBZ domain 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 30543.8 
    Source Method genetically manipulated  
    Entity Name Werner helicase-interacting protein 1 
    Chain C
    Description Ubiquitin 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 8576.9 
    Source Method natural source  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A GFP_AEQVI P42212     
    B WRIP1_HUMAN B2RDB0     
    C E9Q9J0_MOUSE E9Q9J0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.6.1.3      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    8218   Bioluminescence  The Production of Light by Certain Enzyme Catalyzed Reactions in Cells. 
    18298   Protein Chromophore Linkage  The Covalent or Noncovalent Attachment of a Chromophore to a Protein. 


     
  •   Gene Details   Hide

    Natural Source

    Chain C
    Common Name Mouse
    Scientific Name Mus musculus  

    Genetic Source

    Chain B
    Common Name Jellyfish Human
    Scientific Name Aequorea victoria, homo sapiens  
    Gene gfp, whip, wrnip1
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET28


    Chain A
    Common Name Jellyfish
    Scientific Name Aequorea victoria  
    Gene gfp
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET28


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6p25.2 56897     Werner helicase interacting protein 1 WRNIP1    
    11 11 B2|11 38.46 cM 22187     ubiquitin B UBB    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs146408874 LS-SNP   dbSNP   B 237 S - > P Coil 81% (Exposed) 6 2765893
    rs200233974 LS-SNP   dbSNP   B 239 L - > V Turn 23% (Intermediate) 6 2765899