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Crystal structure of -35 promoter binding domain of SigD of Mycobacterium tuberculosis
Biology and Chemistry Report
3VFZ
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION
    Text Transcription regulation, Promoter, Anti-sigma factors, TRANSCRIPTION

    Polymeric Molecules

    Chain A,B
    Description Probable RNA polymerase sigma-D factor 
    Fragment UNP residues 141-212 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 9469.4 
    Source Method genetically manipulated  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B RPSD_MYCTU L0TFB3     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6352   DNA Templated Transcription Initiation  Any Process Involved in the Assembly of the RNA Polymerase Preinitiation Complex (pic) At the Core Promoter Region of a DNA Template Resulting in the Subsequent Synthesis of RNA From That Promoter. the Initiation Phase Includes Pic Assembly and the Formation of the First Few Bonds in the RNA Chain Including Abortive Initiation Which Occurs When the First Few Nucleotides Are Repeatedly Synthesized and Then Released. the Initiation Phase Ends Just Before and Does Not Include Promoter Clearance or Release Which Is the Transition Between the Initiation and Elongation Phases of Transcription. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3700   Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 
    16987   Sigma Factor Activity  A Sigma Factor Is the Promoter Specificity Subunit of Eubacterial Type Multisubunit RNA Polymerases Those Whose Core Subunit Composition Is Often Described As Alpha(2) Beta Beta Prime. (this Type of Multisubunit RNA Polymerase Complex Is Known to Be Found in Eubacteria and Plant Plastids). Although Sigma Does Not Bind DNA On Its Own When Combined with the Core to Form the Holoenzyme This Binds Specifically to Promoter Sequences with the Sigma Factor Making Sequence Specific Contacts with the Promoter Elements. the Sigma Subunit Is Released From the Elongating Form of the Polymerase and Is Thus Free to Act Catalytically For Multiple RNA Polymerase Core Enzymes. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Mycobacterium tuberculosis  
    Strain H37RV
    Gene rv3414c, sigd
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET Duet1