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An Information Portal to 105212 Biological Macromolecular Structures

The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier
Biology and Chemistry Report
3VFK
  •   Structure Details   Hide

    Structure Keywords

    Keywords SUGAR BINDING PROTEIN/ANTIBIOTIC
    Text teicoplanin, acetylation of cyteine with iodoacetate modification, SUGAR BINDING PROTEIN-ANTIBIOTIC complex

    Polymeric Molecules

    Chain A
    Description ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(D) 
    Formula Weight 8952.4 
    Source Method genetically manipulated  
    Entity Name Ubiquitin 
    Chain G
    Description MonodeChloro- Teicoplanin A2-2 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 1172.6 
    Source Method natural source  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GCS  D-GLUCOSAMINE  C6 H13 N O5   179.17  View 
    MAN  ALPHA-D-MANNOSE  C6 H12 O6   180.16  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
    T55  8-METHYLNONANOIC ACID  C10 H20 O2   172.27  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A UBC_HUMAN P0CG48     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Natural Source

    Chain G
    Scientific Name Actinoplanes teichomyceticus  

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Details Four C Terminal Amino Acids Added Non Recombinantly with Native Chemical Ligation
    Gene ubc
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    12 12q24.3 7316     ubiquitin C UBC