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Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P1 Crystal Form
Biology and Chemistry Report
3VEK
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION/DNA
    Text PROTEIN-DNA COMPLEX, ZINC FINGER, TRANSCRIPTION FACTOR, DNA BINDING, NUCLEUS, TRANSCRIPTION-DNA complex

    Polymeric Molecules

    Chain A,D
    Description DNA (5'-D(*TP*TP*GP*TP*CP*TP*TP*AP*TP*CP*AP*GP*AP*TP*GP*GP*AP*CP*TP*C)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 6115.0 
    Source Method synthetic  
    Chain B,E
    Description DNA (5'-D(*AP*AP*GP*AP*GP*TP*CP*CP*AP*TP*CP*TP*GP*AP*TP*AP*AP*GP*AP*C)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 6151.1 
    Source Method synthetic  
    Chain C,F
    Description Erythroid transcription factor 
    Fragment N and C Fingers, residues 200-318 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13507.8 
    Source Method genetically manipulated  
    Entity Name Eryf1, GATA-binding factor 1, GATA-1, GF-1, NF-E1 DNA-binding protein 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    C,F GATA1_MOUSE P17679     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain C,F
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    30218   Erythrocyte Differentiation  The Process in Which a Myeloid Precursor Cell Acquires Specializes Features of an Erythrocyte. 
    30219   Megakaryocyte Differentiation  The Process in Which a Myeloid Precursor Cell Acquires Specializes Features of a Megakaryocyte. 
    30221   Basophil Differentiation  The Process in Which a Relatively Unspecialized Myeloid Precursor Cell Acquires Specialized Features of a Basophil Cell. 
    30222   Eosinophil Differentiation  The Process in Which a Relatively Unspecialized Myeloid Precursor Cell Acquires the Specializes Features of an Eosinophil. 
    48821   Erythrocyte Development  The Process Whose Specific Outcome Is the Progression of an Erythrocyte Over Time From Its Formation to the Mature Structure. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    3700   Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 
    43565   Sequence Specific DNA Binding  Interacting Selectively and Non Covalently with DNA of a Specific Nucleotide Composition E.g. Gc Rich DNA Binding or with a Specific Sequence Motif or Type of DNA E.g. Promotor Binding or Rdna Binding. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain C,F
    Common Name Mouse
    Scientific Name Mus musculus  
    Gene gata1
    Host Scientific Name Escherichia coli  
    Host Strain Rosetta 2
    Host Vector Type Plasmid
    Host Plasmid Name pET-11a


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    X X A2|X 3.59 cM 14460     GATA binding protein 1 GATA1