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Crystal structure of Staphylococcal GAPDH1 in a hexagonal space group
Biology and Chemistry Report
3VAZ
  •   Structure Details   Hide

    Structure Keywords

    Keywords OXIDOREDUCTASE
    Text Rossman fold, OXIDOREDUCTASE

    Polymeric Molecules

    Chain A,B,O,P,Q,R
    Description Glyceraldehyde-3-phosphate dehydrogenase 1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 37294.1 
    Source Method genetically manipulated  
    Entity Name GAPDH 1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    DGY  (2R)-2,3-DIHYDROXYPROPANOIC ACID  C3 H6 O4   106.08  View 
    NAD  NICOTINAMIDE-ADENINE-DINUCLEOTIDE  C21 H27 N7 O14 P2   663.43  View 
    PO4  PHOSPHATE ION  O4 P   94.97  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,O,P,Q,R G3P1_STAAR Q6GIL8     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B O P Q R  1.2.1.12      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,O,P,Q,R
    GO ID   Ontology GO Term Definition
    6006   Glucose Metabolic Process  The Chemical Reactions and Pathways Involving Glucose the Aldohexose Gluco Hexose. D Glucose Is Dextrorotatory and Is Sometimes Known As Dextrose; It Is an Important Source of Energy For Living Organisms and Is Found Free As Well As Combined in Homo and Hetero Oligosaccharides and Polysaccharides. 
    6096   Glycolytic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of a Carbohydrate Into Pyruvate with the Concomitant Production of a Small Amount of Atp. Glycolysis Begins with the Metabolism of a Carbohydrate to Generate Products That Can Enter the Pathway and Ends with the Production of Pyruvate. Pyruvate May Be Converted to Ethanol Lactate or Other Small Molecules or Fed Into the Tca Cycle. 
    55114   Oxidation Reduction Process  A Metabolic Process That Results in the Removal or Addition of One or More Electrons to or From a Substance with or Without the Concomitant Removal or Addition of a Proton or Protons. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    4365   Glyceraldehyde 3 Phosphate Dehydrogenase (nad+) (phosphorylating) Activity  Catalysis of the Reaction: D Glyceraldehyde 3 Phosphate + Phosphate + Nad+ = 3 Phospho D Glyceroyl Phosphate + Nadh + H+. 
    16491   Oxidoreductase Activity  Catalysis of an Oxidation Reduction (redox) Reaction a Reversible Chemical Reaction in Which the Oxidation State of an Atom or Atoms Within a Molecule Is Altered. One Substrate Acts As a Hydrogen or Electron Donor and Becomes Oxidized While the Other Acts As Hydrogen or Electron Acceptor and Becomes Reduced. 
    16620   Oxidoreductase Activity Acting On the Aldehyde or Oxo Group of Donors NAD or Nadp As Acceptor  Catalysis of an Oxidation Reduction (redox) Reaction in Which an Aldehyde or Ketone (oxo) Group Acts As a Hydrogen or Electron Donor and Reduces NAD or Nadp. 
    50661   Nadp Binding  Interacting Selectively and Non Covalently with Nicotinamide Adenine Dinucleotide Phosphate a Coenzyme Involved in Many Redox and Biosynthetic Reactions; Binding May Be to Either the Oxidized Form Nadp+ or the Reduced Form Nadph. 
    51287   NAD Binding  Interacting Selectively and Non Covalently with Nicotinamide Adenine Dinucleotide a Coenzyme Involved in Many Redox and Biosynthetic Reactions; Binding May Be to Either the Oxidized Form Nad+ or the Reduced Form Nadh. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,O,P,Q,R
    Scientific Name Staphylococcus aureus  
    Strain MRSA252
    Gene gap, gapa, gapa1, sar0828
    Host Scientific Name Escherichia coli  
    Host Strain M15
    Host Vector Type Plasmid
    Host Plasmid Name pQE30


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 2860688     glyceraldehyde 3-phosphate dehydrogenase 1 GAP1