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An Information Portal to 109274 Biological Macromolecular Structures

Structural and functional analysis of quercetagetin, a natural JNK1 inhibitor
Biology and Chemistry Report
3V3V
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text TRANSFERASE, PHOSPHORYLATION, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A
    Description Mitogen-activated protein kinase 8 
    Fragment UNP residues 1-363 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 43666.8 
    Source Method genetically manipulated  
    Entity Name MAP kinase 8, MAPK 8, JNK-46, Stress-activated protein kinase 1c, SAPK1c, Stress-activated protein kinase JNK1, c-Jun N-terminal kinase 1 
    Chain B
    Description C-Jun-amino-terminal kinase-interacting protein 1 
    Fragment UNP residues 153-163 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1345.6 
    Source Method synthetic  
    Entity Name JIP-1, JNK-interacting protein 1, Islet-brain-1, IB-1, JNK MAP kinase scaffold protein 1, Mitogen-activated protein kinase 8-interacting protein 1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
    MYU  3,5,6,7-TETRAHYDROXY-2-(3,4-DIHYDROXYPHENYL)-4H-CHROMEN-4-ONE  C15 H10 O8   318.24  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A MK08_HUMAN P45983     
    B JIP1_MOUSE Q9WVI9     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.11.24      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4707   Map Kinase Activity  Catalysis of the Reaction: Protein + ATP = Protein Phosphate + Adp. This Reaction Is the Phosphorylation of Proteins. Mitogen Activated Protein Kinase; a Family of Protein Kinases That Perform a Crucial Step in Relaying Signals From the Plasma Membrane to the Nucleus. They Are Activated by a Wide Range of Proliferation or Differentiation Inducing Signals; Activation Is Strong with Agonists Such As Polypeptide Growth Factors and Tumor Promoting Phorbol Esters But Weak (in Most Cell Backgrounds) by Stress Stimuli. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene mapk8, jnk1, prkm8, sapk1, sapk1c
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Plasmid Name pET-21b


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2|2 E1 19099     mitogen-activated protein kinase 8 interacting protein 1 MAPK8IP1    
    10 10q11.22 5599     mitogen-activated protein kinase 8 MAPK8    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150753150 LS-SNP   dbSNP   A 9 N - > K Turn 63% (Exposed) 10 49609730
    rs200350498 LS-SNP   dbSNP   A 42 A - > T Beta Ladder 13% (Intermediate) 10 49612896
    rs143875999 LS-SNP   dbSNP   A 46 A - > T Turn 34% (Intermediate) 10 49612908
    rs200881923 LS-SNP   dbSNP   A 94 P - > R Bend 14% (Intermediate) 10 49617950
    rs202013888 LS-SNP   dbSNP   A 189 R - > C 3/10 Helix 32% (Intermediate) 10 49628312
    rs1126588 LS-SNP   dbSNP   A 223 I - > V Coil 27% (Intermediate) 10 49632181
    rs1126589 LS-SNP   dbSNP   A 223 I - > M Coil 27% (Intermediate) 10 49632183
    rs1126590 LS-SNP   dbSNP   A 224 L - > V Bend 5% (Buried) 10 49632184
    rs1126593 LS-SNP   dbSNP   A 228 R - > T Bend 73% (Exposed) 10 49632197
    rs199509878 LS-SNP   dbSNP   A 269 Y - > H Coil 69% (Exposed) 10 49634047
    rs142342900 LS-SNP   dbSNP   A 322 N - > S Helix 41% (Exposed) 10 49634516
    rs201417282 LS-SNP   dbSNP   A 357 Y - > H Helix 14% (Intermediate) 10 49639244