An Information Portal to 112722 Biological Macromolecular Structures

crystal structure of ck1d with PF670462 from P21 crystal form
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Text ck1d, kinase, inhibitor, PF670462, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A,B
    Description Casein kinase I isoform delta 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 34350.9 
    Source Method genetically manipulated  
    Entity Name CKI-delta, CKId 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    0CK  4-[1-cyclohexyl-4-(4-fluorophenyl)-1H-imidazol-5-yl]pyrimidin-2-amine  C19 H20 F N5   337.39  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B KC1D_HUMAN P48730     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 

    Protein Analyses

    Measured Binding Affinities   

  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene csnk1d
    Host Scientific Name Spodoptera frugiperda  

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    17 17q25 1453     casein kinase 1, delta CSNK1D    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs11552084 LS-SNP   dbSNP   A 30 A - > V Turn 10% (Intermediate) 17 80223660
    rs104894561 LS-SNP   dbSNP   A 44 T - > A Bend 55% (Exposed) 17 80223619
    rs186931747 LS-SNP   dbSNP   A 105 V - > I Helix 0% (Buried) 17 80213328
    rs149138655 LS-SNP   dbSNP   A 145 V - > A Beta Ladder 0% (Buried) 17 80211023
    rs199554561 LS-SNP   dbSNP   A 207 N - > S Helix 10% (Intermediate) 17 80210426