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MMP12 in a complex with the dimeric adduct: 5-(5-phenylhydantoin)-5-phenylhydantoin
Biology and Chemistry Report
3UVC
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text hydrolase, metalloprotease

    Polymeric Molecules

    Chain A,B
    Description Macrophage metalloelastase 
    Fragment CATALYTIC DOMAIN, RESIDUES 106-263 
    Mutation E216A 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 18280.6 
    Source Method genetically manipulated  
    Entity Name MME, Macrophage elastase, ME, hME, Matrix metalloproteinase-12, MMP-12 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    0D2  (4R,4'S)-4,4'-diphenyl-4,4'-biimidazolidine-2,2',5,5'-tetrone  C18 H14 N4 O4   350.33  View 
    CA  CALCIUM ION  Ca   40.08  View 
    CL  CHLORIDE ION  Cl   35.45  View 
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
    IMD  IMIDAZOLE  C3 H5 N2   69.09  View 
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B MMP12_HUMAN B2R9X8     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  3.4.24.65      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene 4321, hme, mmp12
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name Pet11a


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    11 11q22.3 4321     matrix metallopeptidase 12 (macrophage elastase) MMP12    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs201868025 LS-SNP   dbSNP   A 113 Y - > C Beta Ladder 56% (Exposed) 11 102743607
    rs61730844 LS-SNP   dbSNP   A 127 R - > H Helix 65% (Exposed) 11 102742653 CL
    rs202141359 LS-SNP   dbSNP   A 129 D - > V Helix 37% (Exposed) 11 102742647
    rs201046473 LS-SNP   dbSNP   A 130 V - > A Helix 0% (Buried) 11 102742644
    rs180918521 LS-SNP   dbSNP   A 135 R - > Q Helix 46% (Exposed) 11 102742629 CL
    rs200079972 LS-SNP   dbSNP   A 139 Q - > P Helix 38% (Exposed) 11 102742617
    rs188003361 LS-SNP   dbSNP   A 147 L - > F Coil 2% (Buried) 11 102742592 CA,CL
    rs199891377 LS-SNP   dbSNP   A 162 V - > G Beta Ladder 15% (Intermediate) 11 102742548
    rs61730845 LS-SNP   dbSNP   A 165 R - > H Coil 56% (Exposed) 11 102742539 CA
    rs201575382 LS-SNP   dbSNP   A 165 R - > C Coil 56% (Exposed) 11 102742540 CA
    rs200263416 LS-SNP   dbSNP   A 168 H - > Y Coil 22% (Intermediate) 11 102742447 ZN
    rs201174015 LS-SNP   dbSNP   A 198 D - > N Beta Ladder 0% (Buried) 11 102742357 CA
    rs200787919 LS-SNP   dbSNP   A 210 T - > N Beta Ladder 9% (Intermediate) 11 102738796
    rs202042208 LS-SNP   dbSNP   A 218 H - > Y Helix 21% (Intermediate) 11 102738774 ZN,0D2
    rs200751457 LS-SNP   dbSNP   A 219 E - > *K Helix 4% (Buried) 11 102738771 0D2
    rs199654990 LS-SNP   dbSNP   A 220 I - > L Helix 2% (Buried) 11 102738768
    rs201408320 LS-SNP   dbSNP   A 221 G - > A Helix 0% (Buried) 11 102738764
    rs200176944 LS-SNP   dbSNP   A 233 K - > T Turn 40% (Exposed) 11 102738728
    rs199783271 LS-SNP   dbSNP   A 235 V - > I Turn 18% (Intermediate) 11 102738723
    rs183458117 LS-SNP   dbSNP   A 249 R - > CS Coil 87% (Exposed) 11 102738681
    rs201987840 LS-SNP   dbSNP   A 249 R - > H Coil 87% (Exposed) 11 102738680