An Information Portal to 107754 Biological Macromolecular Structures

Crystal structure of DAVA-4
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Keywords ISOMERASE
    Text shuttle movement of non-cofactor bound intermediates, ISOMERASE

    Polymeric Molecules

    Chain A,B
    Description Glutamate-1-semialdehyde 2,1-aminomutase 
    Fragment UNP residues 7-433 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 45588.5 
    Source Method genetically manipulated  
    Entity Name GSA, Glutamate-1-semialdehyde aminotransferase, GSA-AT 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    HOZ  (4S)-4,5-DIAMINOPENTANOIC ACID  C5 H12 N2 O2   132.16  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B GSA_SYNE7 Q31QJ2     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6779   Porphyrin Containing Compound Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Any Member of a Large Group of Derivatives or Analogs of Porphyrin. Porphyrin Consists of a Ring of Four Pyrrole Nuclei Linked Each to the Next At Their Alpha Positions Through a Methine Group. 
    6782   Protoporphyrinogen Ix Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Protoporphyrinogen Ix. 
    15995   Chlorophyll Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Chlorophyll Any Compound of Magnesium Complexed in a Porphyrin (tetrapyrrole) Ring and Which Functions As a Photosynthetic Pigment From Less Complex Precursors. 
    33014   Tetrapyrrole Biosynthetic Process  The Chemical Reactions and Pathways Leading to the Formation of Tetrapyrroles Natural Pigments Containing Four Pyrrole Rings Joined by One Carbon Units Linking Position 2 of One Pyrrole Ring to Position 5 of the Next. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    8483   Transaminase Activity  Catalysis of the Transfer of an Amino Group to an Acceptor Usually a 2 Oxo Acid. 
    16853   Isomerase Activity  Catalysis of the Geometric or Structural Changes Within One Molecule. Isomerase Is the Systematic Name For Any Enzyme of EC Class 5. 
    30170   Pyridoxal Phosphate Binding  Interacting Selectively and Non Covalently with Pyridoxal 5' Phosphate 3 Hydroxy 5 (hydroxymethyl) 2 Methyl4 Pyridine Carboxaldehyde 5' Phosphate the Biologically Active Form of Vitamin B6. 
    42286   Glutamate 1 Semialdehyde 2 1 Aminomutase Activity  Catalysis of the Reaction: (s) 4 Amino 5 Oxopentanoate = 5 Aminolevulinate. 

  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Synechococcus elongatus  
    Strain PCC 7942
    Host Scientific Name Escherichia coli