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Crystal structure of Escherichia coli DmsD in space group P212121
Biology and Chemistry Report
3U41
  •   Structure Details   Hide

    Structure Keywords

    Keywords CHAPERONE
    Text TorD-like DmsD, Chaperone Translocation TorD-like TAT, preDmsA, Cytosol, CHAPERONE

    Polymeric Molecules

    Chain A,B,C,D,E,F,G,H
    Description Twin-arginine leader-binding protein dmsD 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23646.0 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    PEG  DI(HYDROXYETHYL)ETHER  C4 H10 O3   106.12  View 
    SO4  SULFATE ION  O4 S   96.06  View 
    TRS  2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL  C4 H12 N O3   122.14  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F,G,H DMSD_ECOLI P69853     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D,E,F,G,H
    GO ID   Ontology GO Term Definition
    61077   Chaperone Mediated Protein Folding  The Process of Inhibiting Aggregation and Assisting in the Covalent and Noncovalent Assembly of Single Chain Polypeptides or Multisubunit Complexes Into the Correct Tertiary Structure That Is Dependent On Interaction with a Chaperone. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5886   Plasma Membrane  The Membrane Surrounding a Cell That Separates the Cell From Its External Environment. It Consists of a Phospholipid Bilayer and Associated Proteins. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    31234   Extrinsic Component of Cytoplasmic Side of Plasma Membrane  The Component of a Plasma Membrane Consisting of Gene Products and Protein Complexes That Are Loosely Bound to Its Cytoplasmic Surface But Not Integrated Into the Hydrophobic Region. 
    5048   Signal Sequence Binding  Interacting Selectively and Non Covalently with a Signal Sequence a Specific Peptide Sequence Found On Protein Precursors or Mature Proteins That Dictates Where the Mature Protein Is Localized. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D,E,F,G,H
    Scientific Name Escherichia coli  
    Strain K12
    Gene b1591, dmsd, jw5262, ynfi
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET-15b