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Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain ZM109
Biology and Chemistry Report
3U2S
  •   Structure Details   Hide

    Structure Keywords

    Keywords IMMUNE SYSTEM
    Text greek key, immunoglobulin, immune recognition, IMMUNE SYSTEM

    Polymeric Molecules

    Chain A,H
    Description PG9 heavy chain 
    Fragment antigen-binding fragment 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 27193.3 
    Source Method genetically manipulated  
    Chain B,L
    Description PG9 light chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 22837.4 
    Source Method genetically manipulated  
    Chain C,G
    Description Envelope glycoprotein gp120 
    Fragment V1V2 region 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13490.1 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BMA  BETA-D-MANNOSE  C6 H12 O6   180.16  View 
    BU3  (R,R)-2,3-BUTANEDIOL  C4 H10 O2   90.12  View 
    MAN  ALPHA-D-MANNOSE  C6 H12 O6   180.16  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    C,G Q6TCP8_9HIV1 Q6TCP8     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain C,G
    GO ID   Ontology GO Term Definition
    5618   Cell Wall  The Rigid or Semi Rigid Envelope Lying Outside the Cell Membrane of Plant Fungal Most Prokaryotic Cells and Some Protozoan Parasites Maintaining Their Shape and Protecting Them From Osmotic Lysis. in Plants It Is Made of Cellulose and Often Lignin; in Fungi It Is Composed Largely of Polysaccharides; in Bacteria It Is Composed of Peptidoglycan; in Protozoan Parasites Such As Giardia Species It's Made of Carbohydrates and Proteins. 
    19031   Viral Envelope  The Lipid Bilayer of a Virion That Surrounds the Protein Capsid. May Also Contain Glycoproteins. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain C,G
    Scientific Name Human immunodeficiency virus 1  
    Strain ZM109
    Gene env
    Host Common Name Human
    Host Scientific Name Homo sapiens  
    Host Cell Line Hek293s Gnti
    Host Vector Type Plasmid
    Host Plasmid Name pVRC8400


    Chain B,L
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Human
    Host Scientific Name Homo sapiens  
    Host Cell Line Hek293
    Host Vector Type Plasmid
    Host Plasmid Name pVRC8400


    Chain A,H
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Human
    Host Scientific Name Homo sapiens  
    Host Cell Line Hek293
    Host Vector Type Plasmid
    Host Plasmid Name pVRC8400