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Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120
Biology and Chemistry Report
3SE9
  •   Structure Details   Hide

    Structure Keywords

    Keywords VIRAL PROTEIN/IMMUNE SYSTEM
    Text HIV, GP120, ANTIBODY, VRC-PG04, NEUTRALIZATION, VACCINE, ENVELOPE GLYCOPROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX

    Polymeric Molecules

    Chain G
    Description HIV-1 Clade AE strain 93TH057 gp120 
    Fragment Core gp120 with trancations 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 39211.8 
    Source Method genetically manipulated  
    Chain H
    Description Heavy chain of antibody VRC-PG04 
    Fragment Antigen binding fragement of heavy chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24644.9 
    Source Method genetically manipulated  
    Chain L
    Description Light chain of antibody VRC-PG04 
    Fragment antibody light chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23074.0 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BU3  (R,R)-2,3-BUTANEDIOL  C4 H10 O2   90.12  View 
    CL  CHLORIDE ION  Cl   35.45  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
    SO4  SULFATE ION  O4 S   96.06  View 
    TRS  2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL  C4 H12 N O3   122.14  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    G Q0ED31_9HIV1 Q0ED31     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    Immune Epitopes (B-cell and T-Cell)

    Immune Epitope Database (IEDB)
    Epitope ID 193130    
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain G
    GO ID   Ontology GO Term Definition
    19031   Viral Envelope  The Lipid Bilayer of a Virion That Surrounds the Protein Capsid. May Also Contain Glycoproteins. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain L
    Scientific Name Homo sapiens  
    Details Co Transfection of Both Heavy and Light Chain Plasmids
    Gene antibody vrc-pg04 light chain
    Host Scientific Name Homo sapiens  
    Host Strain 293f Cells
    Host Vector Type Plasmid
    Host Plasmid Name CMVR derived plasmids for IgG1


    Chain H
    Scientific Name Homo sapiens  
    Details Co Transfection of Both Heavy and Light Chain Plasmids
    Gene antibody vrc-pg04 heavy chain
    Host Scientific Name Homo sapiens  
    Host Strain 293f Cells
    Host Vector Type Plasmid
    Host Plasmid Name CMVR derived plasmids for IgG1


    Chain G
    Scientific Name Human immunodeficiency virus 1  
    Strain 93TH057
    Gene gp120
    Host Scientific Name Homo sapiens  
    Host Strain 293f
    Host Vector Type Plasmid
    Host Plasmid Name pVRC8400