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New strategy to analyze structures of glycopeptide antibiotic-target complexes
Biology and Chemistry Report
3RUM
  •   Structure Details   Hide

    Structure Keywords

    Keywords SUGAR BINDING PROTEIN/ANTIBIOTIC
    Text antibiotic, glycopeptide, native protein ligation, fusion, carboxymethylation of cysteine, ristocetin, SUGAR BINDING PROTEIN-ANTIBIOTIC complex

    Polymeric Molecules

    Chain A
    Description Maltose-binding periplasmic protein 
    Fragment UNP RESIDUES 27-392 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 41343.2 
    Source Method genetically manipulated  
    Entity Name MBP, MMBP, Maltodextrin-binding protein 
    Chain B,C
    Description Ristocetin 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 1182.2 
    Source Method natural source  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BGC  BETA-D-GLUCOSE  C6 H12 O6   180.16  View 
    BXY  alpha-D-arabinofuranose  C5 H10 O5   150.13  View 
    IPA  ISOPROPYL ALCOHOL  C3 H8 O   60.10  View 
    MAL  MALTOSE  C12 H22 O11   342.30  View 
    MAN  ALPHA-D-MANNOSE  C6 H12 O6   180.16  View 
    RAM  ALPHA-L-RHAMNOSE  C6 H12 O5   164.16  View 
    RST  RISTOSAMINE  C6 H13 N O3   147.17  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A MALE_ECOLI P02928     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6810   Transport  The Directed Movement of Substances (such As Macromolecules Small Molecules Ions) Into Out of or Within a Cell or Between Cells or Within a Multicellular Organism by Means of Some Agent Such As a Transporter or Pore. 
    8643   Carbohydrate Transport  The Directed Movement of Carbohydrate Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. Carbohydrates Are Any of a Group of Organic Compounds Based of the General Formula Cx(h2o)y. 
    42597   Periplasmic Space  The Region Between the Inner (cytoplasmic) and Outer Membrane (gram Negative Bacteria) or Cytoplasmic Membrane and Cell Wall (fungi and Gram Positive Bacteria). 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 


     
  •   Gene Details   Hide

    Natural Source

    Chain B,C
    Scientific Name Amycolatopsis lurida  

    Genetic Source

    Chain A
    Scientific Name Escherichia coli k-12  
    Strain K12
    Gene male, b4034, jw3994
    Host Scientific Name Escherichia coli