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Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab
Biology and Chemistry Report
3RU8
  •   Structure Details   Hide

    Structure Keywords

    Keywords DE NOVO PROTEIN, IMMUNE SYSTEM
    Text binding epitope from HIV on a heterologous protein, IMMUNE SYSTEM, DE NOVO PROTEIN

    Polymeric Molecules

    Chain X
    Description Epitope Scaffold 2bodx43 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 30043.5 
    Source Method genetically manipulated  
    Chain H
    Description Antibody b12, Heavy Chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24939.1 
    Source Method genetically manipulated  
    Chain L
    Description Antibody b12, Light Chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23707.5 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    L IGKC_HUMAN P01834     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    Immune Epitopes (B-cell and T-Cell)

    Immune Epitope Database (IEDB)
    Epitope ID 180305    
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain L
    GO ID   Ontology GO Term Definition
    3823   Antigen Binding  Interacting Selectively and Non Covalently with an Antigen Any Substance Which Is Capable of Inducing a Specific Immune Response and of Reacting with the Products of That Response the Specific Antibody or Specifically Sensitized T Lymphocytes or Both. Binding May Counteract the Biological Activity of the Antigen. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain L
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Homo sapiens  


    Chain H
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Homo sapiens  


    Chain X
    Scientific Name Human immunodeficiency virus, synthetic construct, thermomonospora fusca  
    Host Scientific Name Escherichia coli  
    Host Vector Type Plasmid
    Host Plasmid Name pET29