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Structure of Bace-1 (Beta-Secretase) in Complex with 6-(2-(3,3-Dimethylbut-1-ynyl)phenyl)quinolin-2-amine
Biology and Chemistry Report
3RTH
  •   Structure Details   Hide

    Structure Keywords

    Keywords Hydrolase/Hydrolase Inhibitor
    Text ASPARTIC PROTEASE, Hydrolase-Hydrolase Inhibitor complex

    Polymeric Molecules

    Chain A
    Description Beta-secretase 1 
    Fragment UNP residues 43-453 
    Mutation R14K, R15K 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 45822.9 
    Source Method genetically manipulated  
    Entity Name Aspartyl protease 2, ASP2, Asp 2, Beta-site amyloid precursor protein cleaving enzyme 1, Beta-site APP cleaving enzyme 1, Memapsin-2, Membrane-associated aspartic protease 2 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    IOD  IODIDE ION  I   126.90  View 
    RTH  6-[2-(3,3-dimethylbut-1-yn-1-yl)phenyl]quinolin-2-amine  C21 H20 N2   300.40  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A BACE1_HUMAN A0M8W7     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.4.23.46      

    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene bace1, bace, kiaa1149
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    11 11q23.2-q23.3 23621     beta-site APP-cleaving enzyme 1 BACE1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs17857093 LS-SNP   dbSNP   A 57 S - > F Coil 9% (Intermediate) 11 117166061
    rs138138981 LS-SNP   dbSNP   A 61 R - > Q Beta Ladder 59% (Exposed) 11 117166049
    rs200733909 LS-SNP   dbSNP   A 64 R - > W Beta Ladder 86% (Exposed) 11 117166041
    rs151257620 LS-SNP   dbSNP   A 88 P - > T Turn 42% (Exposed) 11 117165969
    rs200695125 LS-SNP   dbSNP   A 171 G - > R Beta Ladder 23% (Intermediate) 11 117164598
    rs201550686 LS-SNP   dbSNP   A 182 S - > W 3/10 Helix 69% (Exposed) 11 117163882
    rs145565779 LS-SNP   dbSNP   A 202 I - > V Coil 2% (Buried) 11 117163823
    rs28989503 LS-SNP   dbSNP   A 204 V - > A Beta Ladder 6% (Buried) 11 117163816
    rs140050693 LS-SNP   dbSNP   A 211 Q - > H Beta Ladder 71% (Exposed) 11 117163794
    rs149860623 LS-SNP   dbSNP   A 274 T - > S Coil 46% (Exposed) 11 117161704
    rs139977300 LS-SNP   dbSNP   A 328 S - > P Bend 75% (Exposed) 11 117161303