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Crystal Structure of the Kinase domain of Human HER2 (erbB2).
Biology and Chemistry Report
3PP0
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text KINASE DOMAIN, ANTI-ONCOGENE, ATP-BINDING, CELL CYCLE, DISEASE MUTATION, GLYCOPROTEIN, MEMBRANE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, RECEPTOR, SECRETED, TRANSFERASE, TRANSMEMBRANE, TYROSINE-PROTEIN KINASE, TYROSINE KINASE INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A,B
    Description Receptor tyrosine-protein kinase erbB-2 
    Fragment kinase domain, residues 706-1009 
    Mutation M706A, Q711L, M712L 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 38229.3 
    Source Method genetically manipulated  
    Entity Name Metastatic lymph node gene 19 protein, MLN 19, Proto-oncogene Neu, Proto-oncogene c-ErbB-2, Tyrosine kinase-type cell surface receptor HER2, p185erbB2 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    03Q  2-{2-[4-({5-chloro-6-[3-(trifluoromethyl)phenoxy]pyridin-3-yl}amino)-5H-pyrrolo[3,2-d]pyrimidin-5-yl]ethoxy}ethanol  C22 H19 Cl F3 N5 O3   493.87  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B ERBB2_HUMAN B2RZG3     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  2.7.10.1      

    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene erbb2, her2, mln19, neu, ngl
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Baculovirus
    Host Plasmid Name pFastBac1


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    17 17q12 2064     v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 ERBB2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs121913470 LS-SNP   dbSNP   A 755 L - > S Beta Ladder 12% (Intermediate) 17 37880220
    rs56366519 LS-SNP   dbSNP   A 768 L - > S Helix 3% (Buried) 17 37880259
    rs121913468 LS-SNP   dbSNP   A 769 D - > H Helix 22% (Intermediate) 17 37880261
    rs144434331 LS-SNP   dbSNP   A 776 G - > A Bend 12% (Intermediate) 17 37880998
    rs28933369 LS-SNP   dbSNP   A 776 G - > S Bend 12% (Intermediate) 17 37880997
    rs121913471 LS-SNP   dbSNP   A 777 V - > L Coil 93% (Exposed) 17 37881000
    rs146603731 LS-SNP   dbSNP   A 808 D - > E Helix 57% (Exposed) 17 37881095
    rs28933370 LS-SNP   dbSNP   A 857 N - > S Turn 70% (Exposed) 17 37881378
    rs193920750 LS-SNP   dbSNP   A 902 Q - > H Helix 10% (Intermediate) 17 37881636
    rs188440186 LS-SNP   dbSNP   A 902 Q - > P Helix 10% (Intermediate) 17 37881635
    rs28933368 LS-SNP   dbSNP   A 914 E - > K Helix 2% (Buried) 17 37881974
    rs2172826 LS-SNP   dbSNP   A 927 P - > R Coil 29% (Intermediate) 17 37882014
    rs201399875 LS-SNP   dbSNP   A 929 R - > Q 3/10 Helix 81% (Exposed) 17 37882020
    rs138957632 LS-SNP   dbSNP   A 930 E - > D 3/10 Helix 52% (Exposed) 17 37882024
    rs202110098 LS-SNP   dbSNP   A 989 I - > L 3/10 Helix 28% (Intermediate) 17 37882907