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EGFR Kinase domain complexed with tak-285
Biology and Chemistry Report
3POZ
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text KINASE DOMAIN, ANTI-ONCOGENE, ATP-BINDING, CELL CYCLE, DISEASE MUTATION, GLYCOPROTEIN, MEMBRANE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, RECEPTOR, SECRETED, TRANSFERASE, TRANSMEMBRANE, TYROSINE-PROTEIN KINASE, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A
    Description Epidermal growth factor receptor 
    Fragment Residues 606-1022 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 37304.4 
    Source Method genetically manipulated  
    Entity Name Proto-oncogene c-ErbB-1, Receptor tyrosine-protein kinase erbB-1 

    Entity Keywords

    Entity Id EC Number Fragment Mutation Text
    n/a  n/a  n/a  polypeptide 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    03P  N-{2-[4-({3-chloro-4-[3-(trifluoromethyl)phenoxy]phenyl}amino)-5H-pyrrolo[3,2-d]pyrimidin-5-yl]ethyl}-3-hydroxy-3-methylbutanamide  C26 H25 Cl F3 N5 O3   547.96  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A EGFR_HUMAN O00688     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.10.1      

    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene egfr, erbb1
    Host Scientific Name Spodoptera frugiperda  
    Host Strain Sf9
    Host Vector Type Baculovirus
    Host Plasmid Name pFastBacHT


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7p12 1956     epidermal growth factor receptor EGFR    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs28929495 LS-SNP   dbSNP   A 719 G - > CS Beta Ladder 39% (Exposed) 7 55241707 03P
    rs121913428 LS-SNP   dbSNP   A 719 G - > AD Beta Ladder 39% (Exposed) 7 55241708 03P
    rs138240620 LS-SNP   dbSNP   A 727 Y - > C Beta Ladder 22% (Intermediate) 7 55241732
    rs121913434 LS-SNP   dbSNP   A 730 L - > F Beta Ladder 24% (Intermediate) 7 55242418
    rs121913446 LS-SNP   dbSNP   A 733 P - > L Coil 45% (Exposed) 7 55242428
    rs121913466 LS-SNP   dbSNP   A 742 V - > A Beta Ladder 0% (Buried) 7 55242455
    rs121913433 LS-SNP   dbSNP   A 745 K - > R Beta Ladder 17% (Intermediate) 7 55242464 03P
    rs121913427 LS-SNP   dbSNP   A 746 E - > K Beta Ladder 24% (Intermediate) 7 55242466
    rs121913418 LS-SNP   dbSNP   A 761 D - > NY Helix 64% (Exposed) 7 55242511
    rs121913465 LS-SNP   dbSNP   A 768 S - > I Helix 33% (Intermediate) 7 55249005
    rs147149347 LS-SNP   dbSNP   A 769 V - > M Coil 1% (Buried) 7 55249007
    rs121913432 LS-SNP   dbSNP   A 773 H - > R Turn 14% (Intermediate) 7 55249020
    rs121434569 LS-SNP   dbSNP   A 790 T - > M Beta Ladder 18% (Intermediate) 7 55249071 03P
    rs121913230 LS-SNP   dbSNP   A 810 G - > S Coil 6% (Buried) 7 55249130
    rs121913431 LS-SNP   dbSNP   A 810 G - > D Coil 6% (Buried) 7 55249131
    rs150749913 LS-SNP   dbSNP   A 827 Y - > F Helix 15% (Intermediate) 7 55259422
    rs150036236 LS-SNP   dbSNP   A 831 R - > H Turn 44% (Exposed) 7 55259434
    rs146121458 LS-SNP   dbSNP   A 836 R - > H Bend 10% (Intermediate) 7 55259449
    rs143884981 LS-SNP   dbSNP   A 840 A - > T 3/10 Helix 0% (Buried) 7 55259460
    rs146795390 LS-SNP   dbSNP   A 843 V - > I Beta Ladder 0% (Buried) 7 55259469
    rs148934350 LS-SNP   dbSNP   A 848 P - > L Turn 3% (Buried) 7 55259485
    rs121913443 LS-SNP   dbSNP   A 858 L - > M Helix 2% (Buried) 7 55259514 03P
    rs121434568 LS-SNP   dbSNP   A 858 L - > R Helix 2% (Buried) 7 55259515 03P
    rs121913444 LS-SNP   dbSNP   A 861 L - > Q Helix 24% (Intermediate) 7 55259524
    rs151064287 LS-SNP   dbSNP   A 892 T - > I Coil 38% (Exposed) 7 55260508
    rs201830126 LS-SNP   dbSNP   A 955 A - > T 3/10 Helix 20% (Intermediate) 7 55268023
    rs104886026 LS-SNP   dbSNP   A 956 D - > N 3/10 Helix 79% (Exposed) 7 55268026
    rs144496976 LS-SNP   dbSNP   A 962 R - > H Helix 50% (Exposed) 7 55268045
    rs17337451 LS-SNP   dbSNP   A 962 R - > CG Helix 50% (Exposed) 7 55268044
    rs1140476 LS-SNP   dbSNP   A 977 R - > C Helix 63% (Exposed) 7 55268089
    rs17290699 LS-SNP   dbSNP   A 988 H - > P Coil 74% (Exposed) 7 55268897
    rs149248025 LS-SNP   dbSNP   A 999 R - > H Helix 48% (Exposed) 7 55268930