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Thrombin Inhibition by Pyridin Derivatives
Biology and Chemistry Report
3P17
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE/HYDROLASE INHIBITOR
    Text Serine Protease, Kringle, Disulfide Bonds, Blood Coagulation, Blood Clotting, Convertion of Fibrinogen to Fibrin, Cleavage on Pairs of Basic Residues, Thrombin Inhibitor, Glycosylation, HYDROLASE-HYDROLASE INHIBITOR complex

    Polymeric Molecules

    Chain L
    Description thrombin light chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 4096.6 
    Source Method natural source  
    Chain H
    Description thrombin heavy chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 29780.4 
    Source Method natural source  
    Chain I
    Description Hirudin variant-2 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 1534.6 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    99P  D-phenylalanyl-N-(pyridin-3-ylmethyl)-L-prolinamide  C20 H24 N4 O2   352.43  View 
    NA  SODIUM ION  Na   22.99  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
    PO4  PHOSPHATE ION  O4 P   94.97  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    H THRB_HUMAN P00734     
    I HIRV2_HIRME P09945     
    L THRB_HUMAN P00734     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.4.21.5      
    3.4.21.5      
     
  •   Gene Details   Hide

    Natural Source

    Chain H
    Common Name Human
    Scientific Name Homo sapiens  
    Chain L
    Common Name Human
    Scientific Name Homo sapiens  

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    11 11p11 2147     coagulation factor II (thrombin) F2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs121918483 LS-SNP   dbSNP   L 10 E - > K 3/10 Helix 60% (Exposed) 11 46748284