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Crystal structure of the PTPN4 PDZ domain complexed with the C-terminus of a rabies virus G protein
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Text PDZ-PDZ-binding site complex, PROTEIN BINDING

    Polymeric Molecules

    Chain A,B
    Description Tyrosine-protein phosphatase non-receptor type 4 
    Fragment PDZ domain (UNP residues 499-604) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11694.5 
    Source Method genetically manipulated  
    Entity Name Protein-tyrosine phosphatase MEG1, PTPase-MEG1, MEG 
    Chain C,D
    Description Glycoprotein G 
    Fragment UNP residues 512-524 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1476.6 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B PTN4_HUMAN P29074     
    C,D VGLG_RABVE P03524     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B      
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene ptpn4
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Star
    Host Vector Type Plasmid
    Host Plasmid Name pDEST15

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2q14.2 5775     protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) PTPN4    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs145459258 LS-SNP   dbSNP   A 521 K - > I Coil 60% (Exposed) 2 120703963
    rs200942412 LS-SNP   dbSNP   A 572 R - > Q Beta Ladder 36% (Intermediate) 2 120709607
    rs202239321 LS-SNP   dbSNP   A 598 M - > T Beta Ladder 19% (Intermediate) 2 120709685