An Information Portal to 111749 Biological Macromolecular Structures

HIV Protease with fragment 4D9 bound
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Text Protease, TL-3 inhibitor, fragment hit, Aspartyl protease, HYDROLASE-HYDROLASE INHIBITOR COMPLEX

    Polymeric Molecules

    Chain A,B
    Description Protease 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10831.9 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    3TL  benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate  C50 H64 N6 O10   909.08  View 
    4DX  (1S,2S)-2-methylcyclohexanol  C7 H14 O   114.19  View 
    BME  BETA-MERCAPTOETHANOL  C2 H6 O S   78.13  View 
    DMS  DIMETHYL SULFOXIDE  C2 H6 O S   78.13  View 
    POTASSIUM ION  K   39.10  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B POL_HV1Z2 P12499     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6508   Proteolysis  The Hydrolysis of Proteins Into Smaller Polypeptides And/or Amino Acids by Cleavage of Their Peptide Bonds. 
    4190   Aspartic Type Endopeptidase Activity  Catalysis of the Hydrolysis of Internal Alpha Peptide Bonds in a Polypeptide Chain by a Mechanism in Which a Water Molecule Bound by the Side Chains of Aspartic Residues At the Active Center Acts As a Nucleophile. 

    Protein Analyses

    Measured Binding Affinities   

  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Hiv 1
    Scientific Name Human immunodeficiency virus 1  
    Strain R8
    Gene pol
    Host Scientific Name Escherichia coli  
    Host Strain Bl21.de3
    Host Vector Type Plasmid
    Host Plasmid Name PET 21A+