POP-OUT | CLOSE
 
Structure of the measles virus hemagglutinin bound to the CD46 receptor
Biology and Chemistry Report
3INB
  •   Structure Details   Hide

    Structure Keywords

    Keywords VIRAL PROTEIN/IMMUNE SYSTEM
    Text MEASLES, BETA PROPELLER, ENVELOPE PROTEIN, HEMAGGLUTININ, VIRAL PROTEIN. MEMBRANE COFACTOR PROTEIN, MCP, CD46, VIRUS RECEPTOR COMPLEX,SCR, COMPLEMENT CONTROL PROTEIN, IMMUNE SYSTEM COMPLEX, Membrane, Transmembrane, Virion, Cell membrane, Glycoprotein, Host-virus interaction, Signal-anchor, Complement pathway, Disease mutation, Disulfide bond, Fertilization, Immune response, Innate immunity, Phosphoprotein, Sushi, VIRAL PROTEIN, IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX

    Polymeric Molecules

    Chain A,B
    Description Hemagglutinin glycoprotein 
    Fragment Head domain, residues 179-617 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 51560.3 
    Source Method genetically manipulated  
    Chain C,D
    Description Membrane cofactor protein 
    Fragment Sushi domains 1 and 2, residues 35-160 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14517.7 
    Source Method genetically manipulated  
    Entity Name Trophoblast leukocyte common antigen, TLX 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B HEMA_MEASE P08362     
    C,D MCP_HUMAN A0T1T0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Gene cd46, mcp, mic10
    Host Common Name Chinese Hamster
    Host Scientific Name Cricetulus griseus  
    Host Cell Line Ovary Cells
    Host Strain Cho Lec 3281
    Host Vector Type Plasmid
    Host Plasmid Name PBJ5-GS


    Chain A,B
    Common Name Viruses
    Scientific Name Measles virus strain edmonston  
    Strain EDMONSTON
    Gene h
    Host Common Name Chinese Hamster
    Host Scientific Name Cricetulus griseus  
    Host Cell Line Ovary Cells
    Host Strain Cho Lec 3281
    Host Vector Type Plasmid
    Host Plasmid Name PBJ5-GS


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q32 4179     CD46 molecule, complement regulatory protein CD46    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs121909591 LS-SNP   dbSNP   C 1 C - > Y Coil 0% (Buried) 1 207930365
    rs150429980 LS-SNP   dbSNP   C 32 K - > N Turn 72% (Exposed) 1 207930459
    rs200133631 LS-SNP   dbSNP   C 48 R - > W Bend 82% (Exposed) 1 207930505
    rs115177125 LS-SNP   dbSNP   C 64 T - > A Beta 6% (Buried) 1 207930890
    rs116800126 LS-SNP   dbSNP   C 64 T - > I Beta 6% (Buried) 1 207930891