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Crystal structure of human PACSIN1 F-BAR domain (P21 lattice)
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Keywords ENDOCYTOSIS
    Text PACSIN,Syndapin,FAP52,F-BAR, Endocytosis, Phosphoprotein, SH3 domain

    Polymeric Molecules

    Chain A,B,C,D
    Description human PACSIN1 F-BAR 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 36385.4 
    Source Method genetically manipulated  
    Entity Name Protein kinase C and casein kinase substrate in neurons protein 1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CA  CALCIUM ION  Ca   40.08  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D PACN1_HUMAN Q9BY11     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D
    GO ID   Ontology GO Term Definition
    7015   Actin Filament Organization  A Process That Is Carried Out At the Cellular Level Which Results in the Assembly Arrangement of Constituent Parts or Disassembly of Cytoskeletal Structures Comprising Actin Filaments. Includes Processes That Control the Spatial Distribution of Actin Filaments Such As Organizing Filaments Into Meshworks Bundles or Other Structures As by Cross Linking. 
    48666   Neuron Development  The Process Whose Specific Outcome Is the Progression of a Neuron Over Time From Initial Commitment of the Cell to a Specific Fate to the Fully Functional Differentiated Cell. 
    97320   Membrane Tubulation  A Modification in a Plasma Membrane Resulting in Formation of a Tubular Invagination. 

  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Gene pacsin1, kiaa1379
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET28a

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6p21.3 29993     protein kinase C and casein kinase substrate in neurons 1 PACSIN1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs201901865 LS-SNP   dbSNP   A 30 K - > R Helix 52% (Exposed) 6 34495134
    rs201041422 LS-SNP   dbSNP   A 65 K - > R Helix 73% (Exposed) 6 34495239
    rs192786048 LS-SNP   dbSNP   A 104 N - > S Helix 31% (Intermediate) 6 34496509
    rs146300537 LS-SNP   dbSNP   A 135 A - > S Helix 2% (Buried) 6 34496601
    rs199650443 LS-SNP   dbSNP   A 173 R - > Q Helix 62% (Exposed) 6 34497235
    rs138349270 LS-SNP   dbSNP   A 179 T - > M Turn 11% (Intermediate) 6 34497253
    rs144349186 LS-SNP   dbSNP   A 216 V - > M Helix 1% (Buried) 6 34497476
    rs148761372 LS-SNP   dbSNP   A 245 L - > F Helix 10% (Intermediate) 6 34497563
    rs200604835 LS-SNP   dbSNP   A 275 I - > M Helix 0% (Buried) 6 34498056
    rs13200925 LS-SNP   dbSNP   A 283 D - > N Helix 3% (Buried) 6 34498078
    rs140400194 LS-SNP   dbSNP   A 297 M - > V Coil 14% (Intermediate) 6 34498120