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Structure of Reovirus sigma1 in Complex with Its Receptor Junctional Adhesion Molecule-A
Biology and Chemistry Report
3EOY
  •   Structure Details   Hide

    Structure Keywords

    Keywords VIRAL PROTEIN/CELL ADHESION
    Text protein complex, virus receptor complex, beta-barrel, beta-spiral repeat, greek key motif, trimer, immunoglobulin superfamily, VIRAL PROTEIN-CELL ADHESION COMPLEX

    Polymeric Molecules

    Chain A,B,C,D,E,F
    Description Outer capsid protein sigma-1 
    Fragment head domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17921.2 
    Source Method genetically manipulated  
    Entity Name Sigma1, Hemagglutinin, Cell attachment protein 
    Chain G,H,I,J,K,L
    Description Junctional adhesion molecule A 
    Fragment D1 domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11518.9 
    Source Method genetically manipulated  
    Entity Name JAM-A, Junctional adhesion molecule 1, JAM-1, Platelet adhesion molecule 1, PAM-1, Platelet F11 receptor 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F SIGM1_REOVD A4ZY26     
    G,H,I,J,K,L JAM1_HUMAN Q9Y624     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D,E,F
    GO ID   Ontology GO Term Definition
    7155   Cell Adhesion  The Attachment of a Cell Either to Another Cell or to an Underlying Substrate Such As the Extracellular Matrix Via Cell Adhesion Molecules. 
    19058   Viral Life Cycle  A Set of Processes Which All Viruses Follow to Ensure Survival; Includes Attachment and Entry of the Virus Particle Decoding of Genome Information Translation of Viral MRNA by Host Ribosomes Genome Replication and Assembly and Release of Viral Particles Containing the Genome. 
    19062   Virion Attachment to Host Cell  The Process by Which a Virion Protein Binds to Molecules On the Host Cellular Surface or Host Cell Surface Projection. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain G,H,I,J,K,L
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3) Plyss
    Host Vector Type Plasmid
    Host Plasmid Name pGEX-4T-3


    Chain A,B,C,D,E,F
    Scientific Name Reovirus  
    Strain TYPE 3/STRAIN DEARING
    Gene s1
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3) Plyss
    Host Vector Type Plasmid
    Host Plasmid Name pGEX-4T-3


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q21.2-q21.3 50848     F11 receptor F11R    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs138194205 LS-SNP   dbSNP   G 40 I - > T Beta Ladder 18% (Intermediate) 1 160971089
    rs77791467 LS-SNP   dbSNP   G 44 N - > K Coil 38% (Exposed) 1 160971076
    rs201500963 LS-SNP   dbSNP   G 50 C - > Y Coil 2% (Buried) 1 160970902
    rs74447326 LS-SNP   dbSNP   G 51 A - > P Beta Ladder 39% (Exposed) 1 160970900
    rs149683377 LS-SNP   dbSNP   G 58 P - > S Coil 17% (Intermediate) 1 160970879
    rs200076351 LS-SNP   dbSNP   G 64 F - > I Beta Ladder 1% (Buried) 1 160970861
    rs142934128 LS-SNP   dbSNP   G 92 T - > A Turn 52% (Exposed) 1 160970535
    rs116727809 LS-SNP   dbSNP   G 101 R - > W 3/10 Helix 65% (Exposed) 1 160970508
    rs144532932 LS-SNP   dbSNP   G 106 T - > A Beta Ladder 26% (Intermediate) 1 160970493
    rs200382582 LS-SNP   dbSNP   G 128 V - > M Beta Ladder 7% (Buried) 1 160970427