POP-OUT | CLOSE
 
Human CTP: Phosphoethanolamine Cytidylyltransferase in complex with CMP
Biology and Chemistry Report
3ELB
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text Kennedy pathway, CMP, CTP, Phosphoethanolamine, cytidylyltransferase, SGC, Structural Genomics Consortium, Nucleotidyltransferase, Phospholipid biosynthesis, Transferase

    Polymeric Molecules

    Chain A
    Description Ethanolamine-phosphate cytidylyltransferase 
    Fragment UNP residues 18-356 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 39118.5 
    Source Method genetically manipulated  
    Entity Name Phosphorylethanolamine transferase, CTP:phosphoethanolamine cytidylyltransferase 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    C5P  CYTIDINE-5'-MONOPHOSPHATE  C9 H14 N3 O8 P   323.20  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PCY2_HUMAN B7Z7A5     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.7.14      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene pcyt2
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)r3 Prare
    Host Vector Type Plasmid
    Host Plasmid Name pNIC-Bsa4


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    17 17q25.3 5833     phosphate cytidylyltransferase 2, ethanolamine PCYT2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs77461091 LS-SNP   dbSNP   A 36 Y - > S Helix 0% (Buried) 17 79867461
    rs199610600 LS-SNP   dbSNP   A 46 R - > Q Helix 32% (Intermediate) 17 79867431
    rs150714189 LS-SNP   dbSNP   A 48 M - > T Turn 38% (Exposed) 17 79867425
    rs201134104 LS-SNP   dbSNP   A 69 P - > S Coil 17% (Intermediate) 17 79866887
    rs35473202 LS-SNP   dbSNP   A 105 Y - > H Turn 25% (Intermediate) 17 79866779
    rs142427972 LS-SNP   dbSNP   A 220 G - > C Beta Ladder 17% (Intermediate) 17 79864654 C5P
    rs17850615 LS-SNP   dbSNP   A 244 Y - > H Beta Ladder 5% (Buried) 17 79864369
    rs144302050 LS-SNP   dbSNP   A 306 C - > F Beta Ladder 0% (Buried) 17 79863310 C5P
    rs1803411 LS-SNP   dbSNP   A 315 D - > Y Coil 20% (Intermediate) 17 79863284
    rs201728723 LS-SNP   dbSNP   A 320 D - > N Coil 29% (Intermediate) 17 79863269
    rs139240273 LS-SNP   dbSNP   A 332 R - > C Beta Ladder 63% (Exposed) 17 79863006
    rs142625466 LS-SNP   dbSNP   A 346 V - > I Helix 8% (Buried) 17 79862964
    rs111682906 LS-SNP   dbSNP   A 351 T - > I Coil 94% (Exposed) 17 79862948