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Crystal structure of DLTA: implications for the reaction mechanism of non-ribosomal peptide synthetase (NRPS) adenylation domains
Biology and Chemistry Report
3E7X
  •   Structure Details   Hide

    Structure Keywords

    Keywords LIGASE
    Text DLTA, NON-RIBOSOMAL PEPTIDE SYNTHETASE, NRPS, ADENYLATION DOMAIN, D-alanylation, D-alanine-Dalanyl, AMP, Ligase

    Polymeric Molecules

    Chain A
    Description D-alanine--poly(phosphoribitol) ligase subunit 1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 56938.0 
    Source Method genetically manipulated  
    Entity Name DLTA PROTEIN, D-alanine-activating enzyme, DAE, D-alanine-D-alanyl carrier protein ligase, DCL 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    AMP  ADENOSINE MONOPHOSPHATE  C10 H14 N5 O7 P   347.22  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A DLTA_BACSU P39581     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    6.1.1.13        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    70395   Lipoteichoic Acid Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Lipoteichoic Acid Which Is a Major Component of the Cell Wall of Gram Positive Bacteria and Typically Consists of a Chain of Glycerol Phosphate Repeating Units Linked to a Glycolipid Anchor. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16874   Ligase Activity  Catalysis of the Joining of Two Substances or Two Groups Within a Single Molecule with the Concomitant Hydrolysis of the Diphosphate Bond in ATP or a Similar Triphosphate. 
    47473   D Alanine Poly(phosphoribitol) Ligase Activity  Catalysis of the Reaction: Poly(ribitol Phosphate) + D Alanine + ATP = O D Alanyl Poly(ribitol Phosphate) + Diphosphate + Amp. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Bacillus subtilis  
    Gene dlta
    Host Scientific Name Escherichia coli  
    Host Strain M15
    Host Vector Type Plasmid
    Host Plasmid Name pQE60


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 937358     D-alanine--poly(phosphoribitol) ligase subunit 1 DLTA