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Crystal structure of Snx9PX-BAR (230-595), C2221
Biology and Chemistry Report
3DYT
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSPORT PROTEIN
    Text 3-helix bundle, BAR domain, PX domain, Phosphoprotein, Protein transport, SH3 domain, Transport, TRANSPORT PROTEIN

    Polymeric Molecules

    Chain A
    Description Sorting nexin-9 
    Fragment UNP residues 230-595 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 43081.6 
    Source Method genetically manipulated  
    Entity Name SH3 and PX domain-containing protein 1, Protein SDP1, SH3 and PX domain-containing protein 3A 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A SNX9_HUMAN Q9Y5X1     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    281   Mitotic Cytokinesis  A Cell Cycle Process That Results in the Division of the Cytoplasm of a Cell After Mitosis Resulting in the Separation of the Original Cell Into Two Daughter Cells. 
    6886   Intracellular Protein Transport  The Directed Movement of Proteins in a Cell Including the Movement of Proteins Between Specific Compartments or Structures Within a Cell Such As Organelles of a Eukaryotic Cell. 
    6897   Endocytosis  A Vesicle Mediated Transport Process in Which Cells Take Up External Materials or Membrane Constituents by the Invagination of a Small Region of the Plasma Membrane to Form a New Membrane Bounded Vesicle. 
    35091   Phosphatidylinositol Binding  Interacting Selectively and Non Covalently with Any Inositol Containing Glycerophospholipid I.e. Phosphatidylinositol (ptdins) and Its Phosphorylated Derivatives. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Homo sapiens  
    Gene snx9, sh3px1, sh3pxd3a
    Host Scientific Name Escherichia coli  
    Host Strain Bl21
    Host Vector Type Plasmid
    Host Plasmid Name pET28a


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6q25.3 51429     sorting nexin 9 SNX9    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs186701810 LS-SNP   dbSNP   A 237 G - > R Beta Ladder 32% (Intermediate) 6 158330700
    rs144603280 LS-SNP   dbSNP   A 281 R - > Q Coil 59% (Exposed) 6 158330950
    rs144693196 LS-SNP   dbSNP   A 282 S - > P Coil 14% (Intermediate) 6 158330952
    rs151064442 LS-SNP   dbSNP   A 340 R - > H Turn 55% (Exposed) 6 158342632
    rs151179291 LS-SNP   dbSNP   A 418 T - > M Helix 49% (Exposed) 6 158349699
    rs146513520 LS-SNP   dbSNP   A 435 Y - > S Helix 32% (Intermediate) 6 158353242
    rs141146899 LS-SNP   dbSNP   A 440 K - > R Helix 51% (Exposed) 6 158353257
    rs150087476 LS-SNP   dbSNP   A 452 S - > R Turn 51% (Exposed) 6 158353294
    rs200966585 LS-SNP   dbSNP   A 461 N - > H Helix 3% (Buried) 6 158357010
    rs187768612 LS-SNP   dbSNP   A 461 N - > S Helix 3% (Buried) 6 158357011
    rs199568656 LS-SNP   dbSNP   A 473 E - > A Helix 49% (Exposed) 6 158357047
    rs148825841 LS-SNP   dbSNP   A 513 A - > G Helix 25% (Intermediate) 6 158359669
    rs143472781 LS-SNP   dbSNP   A 547 A - > V Helix 1% (Buried) 6 158359771
    rs199569684 LS-SNP   dbSNP   A 580 T - > M Helix 33% (Intermediate) 6 158362005
    rs139632031 LS-SNP   dbSNP   A 591 R - > H Turn 55% (Exposed) 6 158363854
    rs148012710 LS-SNP   dbSNP   A 591 R - > C Turn 55% (Exposed) 6 158363853
    rs144262025 LS-SNP   dbSNP   A 595 M - > L Coil 124% (Exposed) 6 158363865