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Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin
Biology and Chemistry Report
3BY4
  •   Structure Details   Hide

    Structure Keywords

    Keywords CELL CYCLE, HYDROLASE
    Text ubiquitin hydrolase, deubiquitinase, CELL CYCLE, HYDROLASE

    Polymeric Molecules

    Chain A
    Description Ubiquitin thioesterase OTU1 
    Fragment Otu domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23869.2 
    Source Method genetically manipulated  
    Entity Name Otu1; OTU domain-containing protein 1 
    Entity Name Sys E.C.3.4.19.12 
    Chain B
    Description Ubiquitin 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 8519.9 
    Source Method genetically manipulated  
    Entity Name Ubiquitin B 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    3CN  3-AMINOPROPANE  C3 H9 N   59.11  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A OTU1_YEAST D6VTI6     
    B UBC_HUMAN P0CG48     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.4.19.12      
     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene ubiquitin b
    Host Scientific Name Escherichia coli bl21(de3)  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pTYB2
    Description Propylamine Added by Intein Mediated Ligation


    Chain A
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Gene otu1
    Host Scientific Name Escherichia coli bl21(de3)  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pTYB2


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    VI - 850500     Otu1p OTU1