POP-OUT | CLOSE
 
CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221
Biology and Chemistry Report
3BRF
  •   Structure Details   Hide

    Structure Keywords

    Keywords DNA BINDING PROTEIN/DNA
    Text protein-DNA complex, signaling, transcription, Notch, DNA-binding, ANK repeat, Developmental protein, Differentiation, EGF-like domain, Glycoprotein, Membrane, Transmembrane, DNA BINDING PROTEIN-DNA COMPLEX

    Polymeric Molecules

    Chain B
    Description DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 4673.1 
    Source Method synthetic  
    Chain C
    Description DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 4504.0 
    Source Method synthetic  
    Chain A
    Description Lin-12 and glp-1 phenotype protein 1, isoform a 
    Fragment core domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 53849.3 
    Source Method genetically manipulated  
    Entity Name DNA-binding protein LAG-1, Lag-1 protein 
    Chain D
    Description Protein lin-12 
    Fragment RAM peptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1650.0 
    Source Method genetically manipulated  
    Entity Name Abnormal cell lineage protein 12 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    SOR  D-SORBITOL  C6 H14 O6   182.17  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    D LIN12_CAEEL P14585     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    978   RNA Polymerase Ii Core Promoter Proximal Region Sequence Specific DNA Binding  Interacting Selectively and Non Covalently with a Sequence of DNA That Is in Cis with and Relatively Close to a Core Promoter For RNA Polymerase Ii. 
    982   RNA Polymerase Ii Core Promoter Proximal Region Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Sequence of DNA That Is in Cis with and Relatively Close to a Core Promoter For RNA Polymerase Ii (rnap Ii) in Order to Modulate Transcription by Rnap Ii. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3700   Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain D
    Scientific Name Caenorhabditis elegans  
    Genus Caenorhabditis
    Gene lin-12
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Rosetta2(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET28


    Chain A
    Scientific Name Caenorhabditis elegans  
    Genus Caenorhabditis
    Gene lag-1
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Rosetta2(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pGEX6P-1


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    IV - 177373     Protein LAG-1 LAG-1    
    III - 176282     Protein LIN-12 LIN-12