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Crystal Structure of Human Pyruvate Carboxylase (missing the biotin carboxylase domain at the N-terminus) F1077A Mutant
Biology and Chemistry Report
3BG9
  •   Structure Details   Hide

    Structure Keywords

    Keywords LIGASE
    Text TIM barrel, ATP-binding, Biotin, Disease mutation, Gluconeogenesis, Ligase, Lipid synthesis, Manganese, Mitochondrion, Multifunctional enzyme, Nucleotide-binding, Phosphoprotein, Transit peptide

    Polymeric Molecules

    Chain A,B,C,D
    Description Pyruvate carboxylase, mitochondrial 
    Fragment CT+PT+BCCP Domain 
    Mutation F1077A 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 78720.9 
    Source Method genetically manipulated  
    Entity Name Pyruvic carboxylase, PCB 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    MN  MANGANESE (II) ION  Mn   54.94  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D PYC_HUMAN P11498     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    A B C D  6.4.1.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D
    GO ID   Ontology GO Term Definition
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene pc
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Bl21(de3) Star
    Host Vector Type Plasmid
    Host Plasmid Name pET28a


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    11 11q13.4-q13.5 5091     pyruvate carboxylase PC    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs45461300 LS-SNP   dbSNP   A 506 H - > Y Helix 20% (Intermediate) 11 66620305
    rs199667095 LS-SNP   dbSNP   A 512 P - > Q Coil 48% (Exposed) 11 66620286
    rs146840773 LS-SNP   dbSNP   A 525 T - > M Bend 40% (Exposed) 11 66620247
    rs200433873 LS-SNP   dbSNP   A 528 V - > I Coil 46% (Exposed) 11 66620239
    rs151174961 LS-SNP   dbSNP   A 538 P - > L Coil 51% (Exposed) 11 66620122
    rs142036463 LS-SNP   dbSNP   A 547 R - > Q Helix 69% (Exposed) 11 66620095
    rs45555439 LS-SNP   dbSNP   A 552 G - > D Helix 2% (Buried) 11 66620080
    rs148613404 LS-SNP   dbSNP   A 555 R - > Q Helix 58% (Exposed) 11 66620071
    rs199969388 LS-SNP   dbSNP   A 568 T - > A Coil 0% (Buried) 11 66620033
    rs113994144 LS-SNP   dbSNP   A 569 T - > A Turn 0% (Buried) 11 66620030
    rs119103242 LS-SNP   dbSNP   A 583 R - > L Coil 1% (Buried) 11 66619987
    rs143725101 LS-SNP   dbSNP   A 589 K - > N Helix 48% (Exposed) 11 66619968
    rs139795235 LS-SNP   dbSNP   A 591 A - > T Helix 0% (Buried) 11 66619964
    rs28940589 LS-SNP   dbSNP   A 610 A - > T Bend 26% (Intermediate) 11 66619415
    rs147396184 LS-SNP   dbSNP   A 613 D - > V Helix 20% (Intermediate) 11 66619405
    rs199568784 LS-SNP   dbSNP   A 625 R - > Q Helix 38% (Exposed) 11 66619369
    rs113994145 LS-SNP   dbSNP   A 631 R - > Q Helix 10% (Intermediate) 11 66619351
    rs138760063 LS-SNP   dbSNP   A 667 K - > T Helix 33% (Intermediate) 11 66618734
    rs185412729 LS-SNP   dbSNP   A 712 D - > N Coil 29% (Intermediate) 11 66618600
    rs193271416 LS-SNP   dbSNP   A 728 E - > K Helix 22% (Intermediate) 11 66618552
    rs112948607 LS-SNP   dbSNP   A 732 R - > G Helix 69% (Exposed) 11 66618540
    rs28940590 LS-SNP   dbSNP   A 743 M - > I Turn 4% (Buried) 11 66618389 MN
    rs145400751 LS-SNP   dbSNP   A 750 T - > M Helix 31% (Intermediate) 11 66618369
    rs148086243 LS-SNP   dbSNP   A 794 V - > L Beta Ladder 0% (Buried) 11 66618238
    rs141730205 LS-SNP   dbSNP   A 830 R - > C Helix 29% (Intermediate) 11 66617921
    rs113994147 LS-SNP   dbSNP   A 847 A - > V 3/10 Helix 6% (Buried) 11 66617869
    rs11550554 LS-SNP   dbSNP   A 867 P - > R Coil 9% (Buried) 11 66617809
    rs139540331 LS-SNP   dbSNP   A 935 A - > V 3/10 Helix 0% (Buried) 11 66617502
    rs192822072 LS-SNP   dbSNP   A 964 R - > C Helix 15% (Intermediate) 11 66617416
    rs145046106 LS-SNP   dbSNP   A 1003 T - > M Coil 37% (Exposed) 11 66617221
    rs199771464 LS-SNP   dbSNP   A 1009 S - > L Helix 0% (Buried) 11 66617203
    rs200315043 LS-SNP   dbSNP   A 1023 F - > L Helix 26% (Intermediate) 11 66617162
    rs141237842 LS-SNP   dbSNP   A 1036 R - > H Helix 12% (Intermediate) 11 66617122
    rs140320331 LS-SNP   dbSNP   A 1037 L - > H Helix 7% (Buried) 11 66617119
    rs148661980 LS-SNP   dbSNP   A 1057 T - > M Coil 35% (Intermediate) 11 66616819
    rs34376611 LS-SNP   dbSNP   A 1065 V - > G Coil 29% (Intermediate) 11 66616795
    rs149583113 LS-SNP   dbSNP   A 1071 A - > G Turn 92% (Exposed) 11 66616777