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Crystal Structure of HIV-1 Reverse Transcriptase (RT) in Complex with TMC278 (Rilpivirine), A Non-nucleoside RT Inhibitor
Biology and Chemistry Report
2ZD1
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE, HYDROLASE/INHIBITOR
    Text P51/P66, HETERO DIMER, NNRTI, NONNUCLEOSIDE INHIBITOR, AIDS, HIV, R278474, RILPIVIRINE, DIARYLPYRIMIDINE, DAPY, DNA RECOMBINATION, RNA-DIRECTED DNA POLYMERASE, DNA POLYMERASE, ENDONUCLEASE, HYDROLASE, MULTIFUNCTIONAL ENZYME, TRANSFERASE, HYDROLASE-INHIBITOR complex

    Polymeric Molecules

    Chain A
    Description Reverse transcriptase/ribonuclease H 
    Fragment P66 
    Mutation C280S, K172A, K173A 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 63990.0 
    Source Method genetically manipulated  
    Entity Name REVERSE TRANSCRIPTASE P66 SUBUNIT 
    Chain B
    Description p51 RT 
    Fragment P51 
    Mutation C280S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 50040.1 
    Source Method genetically manipulated  
    Entity Name REVERSE TRANSCRIPTASE P51 SUBUNIT 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
    SO4  SULFATE ION  O4 S   96.06  View 
    T27  4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile  C22 H18 N6   366.42  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A POL_HV1B1 P03366     
    B POL_HV1B1 P03366     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.7.49        
    2.7.7.7        
    3.1.26.13        
    2.7.7.49        
    2.7.7.7        
    3.1.26.13        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 
    4523   RNA DNA Hybrid Ribonuclease Activity  Catalysis of the Endonucleolytic Cleavage of RNA in RNA DNA Hybrids to 5' Phosphomonoesters. 
    Chain B
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Scientific Name Human immunodeficiency virus 1  
    Genus Lentivirus
    Gene gag-pol
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Bh10 Isolate
    Host Vector Type Plasmid
    Host Plasmid Name pRT52A


    Chain A
    Scientific Name Human immunodeficiency virus 1  
    Genus Lentivirus
    Gene gag-pol
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Bh10 Isolate
    Host Vector Type Plasmid
    Host Plasmid Name pRT52A