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An Information Portal to 105339 Biological Macromolecular Structures

HIV-1 Reverse Transcriptase in complex with inhibitor GSK500
Biology and Chemistry Report
2YNH
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text HYDROLASE, NNRTI

    Polymeric Molecules

    Chain A
    Description REVERSE TRANSCRIPTASE/RIBONUCLEASE H 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 64896.1 
    Source Method genetically manipulated  
    Entity Name EXORIBONUCLEASE H, P66 RT 
    Chain B
    Description P51 RT 
    Fragment RESIDUES 588-1015 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 52239.5 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    EUR  4-chloranyl-N-[[4-chloranyl-3-(3-chloranyl-5-cyano-phenoxy)-2-fluoranyl-phenyl]methyl]-2-(hydroxymethyl)-1H-imidazole-5-carboxamide  C19 H12 Cl3 F N4 O3   469.68  View 
    TAR  D(-)-TARTARIC ACID  C4 H6 O6   150.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A POL_HV1H2 P04585     
    B POL_HV1H2 P04585     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.7.49      
    2.7.7.7      
    3.1.26.13      
    2.7.7.49      
    2.7.7.7      
    3.1.26.13      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 
    4523   RNA DNA Hybrid Ribonuclease Activity  Catalysis of the Endonucleolytic Cleavage of RNA in RNA DNA Hybrids to 5' Phosphomonoesters. 
    Chain B
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human Immunodeficiency Virus Type 1 (hxb2 Isolate)
    Scientific Name Hiv-1 m\:b_hxb2r  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name PKK233-2 VARIANT


    Chain A
    Common Name Human Immunodeficiency Virus Type 1 (hxb2 Isolate)
    Scientific Name Hiv-1 m\:b_hxb2r  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name PKK233-2 VARIANT