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WIF DOMAIN-EGF-LIKE DOMAIN 1 MET77TRP OF HUMAN WNT INHIBITORY FACTOR 1 IN COMPLEX WITH 1,2-DIPALMITOYLPHOSPHATIDYLCHOLINE
Biology and Chemistry Report
2YGP
  •   Structure Details   Hide

    Structure Keywords

    Keywords SIGNALING PROTEIN
    Text SIGNALING PROTEIN, WNT SIGNALING PATHWAY, WNT ANTAGONIST, MORPHOGEN, CANCER, GLYCOSAMINOGLYCAN

    Polymeric Molecules

    Chain A
    Description WNT INHIBITORY FACTOR 1 
    Fragment WIF DOMAIN-EGF-LIKE DOMAIN 1, RESIDUES 35-210 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 21131.2 
    Source Method genetically manipulated  
    Entity Name WIF-1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CA  CALCIUM ION  Ca   40.08  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
    PCF  1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE  C40 H80 N O8 P   734.04  View 
    SPD  SPERMIDINE  C7 H19 N3   145.25  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A WIF1_HUMAN Q6UXI1     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Human
    Host Scientific Name Homo sapiens  
    Host Cell Line N Acetylglucosaminyltransferase I Negative Hek 293s Gnti( )cells
    Host Vector Phlsec
    Host Vector Type Plasmid


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    12 12q14.3 11197     WNT inhibitory factor 1 WIF1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs140939692 LS-SNP   dbSNP   A 73 A - > E Helix 11% (Intermediate) 12 65514267 MLY
    rs199933100 LS-SNP   dbSNP   A 78 P - > R Coil 77% (Exposed) 12 65514252 PCF
    rs144873880 LS-SNP   dbSNP   A 82 V - > L Turn 32% (Intermediate) 12 65514241
    rs146736303 LS-SNP   dbSNP   A 107 R - > C Beta Ladder 43% (Exposed) 12 65471604 MLY
    rs200005354 LS-SNP   dbSNP   A 121 V - > I Bend 25% (Intermediate) 12 65471562
    rs142174625 LS-SNP   dbSNP   A 122 P - > S Coil 70% (Exposed) 12 65471559
    rs201203587 LS-SNP   dbSNP   A 127 V - > G Coil 1% (Buried) 12 65471543
    rs201659899 LS-SNP   dbSNP   A 148 A - > P Beta Ladder 0% (Buried) 12 65462640
    rs143952666 LS-SNP   dbSNP   A 157 M - > I Beta Ladder 16% (Intermediate) 12 65462611
    rs17851594 LS-SNP   dbSNP   A 166 Q - > K Beta Ladder 84% (Exposed) 12 65462586
    rs144593509 LS-SNP   dbSNP   A 196 R - > H Bend 50% (Exposed) 12 65461522