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CRYSTAL STRUCTURE OF CHECKPOINT KINASE 2 IN COMPLEX WITH INHIBITOR PV976
Biology and Chemistry Report
2YCR
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text TRANSFERASE, ANTICANCER DRUG DESIGN

    Polymeric Molecules

    Chain A
    Description SERINE/THREONINE-PROTEIN KINASE CHK2 
    Fragment CATALYTIC DOMAIN, RESIDUES 210-531 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 36578.6 
    Source Method genetically manipulated  
    Entity Name CHECKPOINT KINASE 2, CDS1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    HCW  1,3-BIS{4-[(1E)-N-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)ETHANEHYDRAZONOYL]PHENYL}UREA  C23 H28 N10 O   460.54  View 
    NO3  NITRATE ION  N O3   62.01  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CHK2_HUMAN O96017     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.11.1      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant Ril
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name PDZ1927


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    22 22q12.1 11200     checkpoint kinase 2 CHEK2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs200451612 LS-SNP   dbSNP   A 221 I - > M Beta Ladder 51% (Exposed) 22 29115403
    rs199749372 LS-SNP   dbSNP   A 221 I - > V Beta Ladder 51% (Exposed) 22 29115405
    rs113947614 LS-SNP   dbSNP   A 221 I - > T Beta Ladder 51% (Exposed) 22 29115404
    rs121908702 LS-SNP   dbSNP   A 239 E - > *K Beta Ladder 13% (Intermediate) 22 29107974
    rs141776984 LS-SNP   dbSNP   A 243 C - > R Turn 78% (Exposed) 22 29107962
    rs148053495 LS-SNP   dbSNP   A 318 R - > C Coil 30% (Intermediate) 22 29095882
    rs143611747 LS-SNP   dbSNP   A 318 R - > H Coil 30% (Intermediate) 22 29095881
    rs141502354 LS-SNP   dbSNP   A 343 I - > V Beta Ladder 0% (Buried) 22 29092957
    rs202051128 LS-SNP   dbSNP   A 344 I - > M Beta Ladder 3% (Buried) 22 29092952 NO3
    rs201206424 LS-SNP   dbSNP   A 346 R - > C Coil 43% (Exposed) 22 29092948
    rs28909980 LS-SNP   dbSNP   A 347 D - > N Coil 17% (Intermediate) 22 29092945
    rs121908703 LS-SNP   dbSNP   A 356 S - > L Bend 26% (Intermediate) 22 29092917
    rs199859140 LS-SNP   dbSNP   A 361 D - > H Bend 47% (Exposed) 22 29092903
    rs147877722 LS-SNP   dbSNP   A 372 S - > F Coil 7% (Buried) 22 29091842
    rs142470496 LS-SNP   dbSNP   A 373 K - > E Beta Ladder 63% (Exposed) 22 29091840
    rs202089930 LS-SNP   dbSNP   A 383 T - > I Helix 41% (Exposed) 22 29091809
    rs145324174 LS-SNP   dbSNP   A 385 C - > Y Turn 89% (Exposed) 22 29091803
    rs200928781 LS-SNP   dbSNP   A 390 Y - > C Turn 101% (Exposed) 22 29091788
    rs121908704 LS-SNP   dbSNP   A 401 T - > A Turn 59% (Exposed) 22 29091756
    rs200649225 LS-SNP   dbSNP   A 406 R - > H Turn 40% (Exposed) 22 29091740 NO3
    rs139366548 LS-SNP   dbSNP   A 424 Y - > H Bend 8% (Buried) 22 29091220
    rs137853011 LS-SNP   dbSNP   A 428 S - > F Coil 26% (Intermediate) 22 29091207
    rs17882922 LS-SNP   dbSNP   A 436 L - > M Helix 38% (Exposed) 22 29091184
    rs200050883 LS-SNP   dbSNP   A 438 D - > Y Helix 50% (Exposed) 22 29091178
    rs121908705 LS-SNP   dbSNP   A 446 N - > D Coil 43% (Exposed) 22 29091154
    rs17880867 LS-SNP   dbSNP   A 446 N - > K Coil 43% (Exposed) 22 29091152
    rs17881473 LS-SNP   dbSNP   A 447 F - > I Coil 43% (Exposed) 22 29091151
    rs17886163 LS-SNP   dbSNP   A 448 I - > S Coil 28% (Intermediate) 22 29091147
    rs139088611 LS-SNP   dbSNP   A 451 V - > A Helix 23% (Intermediate) 22 29091138
    rs121908706 LS-SNP   dbSNP   A 474 R - > H Bend 10% (Intermediate) 22 29090060
    rs142763740 LS-SNP   dbSNP   A 476 T - > M Coil 35% (Intermediate) 22 29090054
    rs143965148 LS-SNP   dbSNP   A 497 D - > N Helix 46% (Exposed) 22 29085176
    rs28909981 LS-SNP   dbSNP   A 500 S - > C Helix 65% (Exposed) 22 29085166
    rs17883172 LS-SNP   dbSNP   A 501 E - > K Helix 63% (Exposed) 22 29085164