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EPHB4 KINASE DOMAIN INHIBITOR COMPLEX
Biology and Chemistry Report
2XVD
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text TRANSFERASE, NUCLEOTIDE-BINDING

    Polymeric Molecules

    Chain A
    Description EPHRIN TYPE-B RECEPTOR 4 
    Fragment KINASE DOMAIN, RESIDUES 598-899 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 33935.1 
    Source Method genetically manipulated  
    Entity Name TYROSINE-PROTEIN KINASE TYRO11, TYROSINE-PROTEIN KINASE RECEPTOR HTK 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    AS6  {4-METHYL-3-[(1-METHYLETHYL)(2-{[3-(METHYLSULFONYL)-5-MORPHOLIN-4-YLPHENYL]AMINO}PYRIMIDIN-4-YL)AMINO]PHENYL}METHANOL  C26 H33 N5 O4 S   511.64  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A EPHB4_HUMAN P54760     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.10.1      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4713   Protein Tyrosine Kinase Activity  Catalysis of the Reaction: ATP + a Protein Tyrosine = Adp + Protein Tyrosine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf21
    Host Vector Type Baculovirus
    Host Plasmid Name PFASTBAC


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7q22 2050     EPH receptor B4 EPHB4    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs199997663 LS-SNP   dbSNP   A 653 Y - > F Coil 62% (Exposed) 7 100410529
    rs201283096 LS-SNP   dbSNP   A 656 R - > Q Helix 53% (Exposed) 7 100410520
    rs142798266 LS-SNP   dbSNP   A 658 R - > W Helix 31% (Intermediate) 7 100410515
    rs148505212 LS-SNP   dbSNP   A 675 N - > S Turn 11% (Intermediate) 7 100410463
    rs55692440 LS-SNP   dbSNP   A 678 R - > H Coil 46% (Exposed) 7 100410454
    rs58976385 LS-SNP   dbSNP   A 694 E - > K Beta Ladder 9% (Buried) 7 100410407 AS6
    rs144756820 LS-SNP   dbSNP   A 696 M - > I Coil 6% (Buried) 7 100410399 AS6
    rs202157491 LS-SNP   dbSNP   A 709 D - > N Turn 63% (Exposed) 7 100405196
    rs200376692 LS-SNP   dbSNP   A 751 N - > I Turn 84% (Exposed) 7 100405069
    rs138760334 LS-SNP   dbSNP   A 764 F - > C Coil 13% (Intermediate) 7 100405030
    rs199910843 LS-SNP   dbSNP   A 810 M - > I Helix 0% (Buried) 7 100404096
    rs147110749 LS-SNP   dbSNP   A 825 S - > N Coil 42% (Exposed) 7 100404052
    rs201842419 LS-SNP   dbSNP   A 873 A - > T Helix 30% (Intermediate) 7 100403184
    rs34918225 LS-SNP   dbSNP   A 882 A - > T 3/10 Helix 75% (Exposed) 7 100403157